Gephebase

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Your research retrieved 34 results.

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Gene	Trait	Mutation	Taxon B	Taxonomic Status	Evidence	Main Reference	Gephe ID	UniProtKB	Trait Category	Mutation Details	Taxon A	Taxon B	Edit Gene-GePhe	Taxon B	Status
Barren inflorescence2 (BIF2)	Plant architecture Inflorescence architecture	Unknown, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Pressoir G; Brown PJ; Zhu W ; et al. (2009) Natural variation in maize architecture is mediated by allelic differences at the PINOID co-ortholog[...] 1 Additional References Buckler ES; Holland JB; Bradbury PJ (2009) The genetic architecture of maize flowering time.	GP00000135	bif2 A6MW92	Morphology Morphology	unknown	Zea mays (species)	Zea mays (species)	Barren inflorescence2 (BIF2)	Zea mays (species)	Published - Accepted by Curator
Brassinosteroid-deficient dwarf1 (brd1)	Plant size (height)	Unknown, Unknown	Zea mays (species)	Intraspecific	Linkage Mapping	Peiffer JA; Romay MC; Gore MA ; et al. (2014) The genetic architecture of maize height.	GP00001628	ZEAMMB73_Zm00001d033180 A0A1D6KWT1	Morphology	On chromosome 1 two C>T transitions reduce plant height in 18RIL families	Zea mays (species)	Zea mays (species)	Brassinosteroid-deficient dwarf1 (brd1)	Zea mays (species)	Published - Accepted by Curator
brittle endosperm2 (Bt2) = endosperm ADP-glucose pyrophosphorylase small subunit	Sweet and brittle seed	Unknown, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Preiss J; Danner S; Summers PS ; et al. (1990) Molecular Characterization of the Brittle-2 Gene Effect on Maize Endosperm ADPglucose Pyrophosphoryl[...]	GP00000158	bt2 Q84J79	Physiology	Not identified	Zea mays (species)	Zea mays (species)	brittle endosperm2 (Bt2) = endosperm ADP-glucose pyrophosphorylase small subunit	Zea mays (species)	Published - Accepted by Curator
c1	Coloration (seed)	Cis-regulatory, Insertion	Zea mays (species) D	Domesticated	Linkage Mapping	Hattori T; Vasil V; Rosenkrans L ; et al. (1992) The Viviparous-1 gene and abscisic acid activate the C1 regulatory gene for anthocyanin biosynthesis[...] 1 Additional References Hanson MA; Gaut BS; Stec AO (1996) Evolution of anthocyanin biosynthesis in maize kernels: the role of regulatory and enzymatic loci.	GP00000167	C1 P10290	Morphology	5bp insertion in the proximal promoter that creates a new binding site for VP1; a transcription factor that regulates kernel maturation; so that the pigment pathway is turned on while the kernel matures; giving blue kernels	Zea mays (species)	Zea mays (species) D	c1	Zea mays (species)	Published - Accepted by Curator
Camta3	Plant size (height)	Unknown, Unknown	Zea mays (species)	Intraspecific	Association Mapping	Peiffer JA; Romay MC; Gore MA ; et al. (2014) The genetic architecture of maize height.	GP00001629	CAMTA3 Q8GSA7	Morphology	C>T transition on chromosome 3	Zea mays (species)	Zea mays (species)	Camta3	Zea mays (species)	Published - Accepted by Curator
colored plant 1	Coloration (seed)	Cis-regulatory, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Radicella JP; Brown D; Tolar LA ; et al. (1992) Allelic diversity of the maize B regulatory gene: different leader and promoter sequences of two B a[...]	GP00000190	b1 W5S3Q3	Morphology	Not identified	Zea mays (species)	Zea mays (species)	colored plant 1	Zea mays (species)	Published - Accepted by Curator
diacylglycerol acyltransferase 1-2 (DGAT1-2)	Oil composition Oil yield	Coding, Deletion	Zea mays (species) D	Domesticated	Linkage Mapping	Zheng P; Allen WB; Roesler K ; et al. (2008) A phenylalanine in DGAT is a key determinant of oil content and composition in maize.	GP00000223	DGAT1-2 B0LF77	Physiology Physiology	Deletion of amino acid F469	Zea mays (species)	Zea mays (species) D	diacylglycerol acyltransferase 1-2 (DGAT1-2)	Zea mays (species)	Published - Accepted by Curator
dwarf-8 (d8)	Plant size (dwarfism)	Coding, Deletion N	Zea mays (species) D	Domesticated	Linkage Mapping	Peng J; Richards DE; Hartley NM ; et al. (1999) 'Green revolution' genes encode mutant gibberellin response modulators. 2 Additional References Camus-Kulandaivelu L; Veyrieras JB; Madur D (2006) Maize adaptation to temperate climate: relationship between population structure and polymorphism in[...] Thornsberry JM; Goodman MM; Doebley J (2001) Dwarf8 polymorphisms associate with variation in flowering time.	GP00000241	D8 Q9ST48	Morphology	330bp deletion to V84 N	Zea mays (species)	Zea mays (species) D	dwarf-8 (d8)	Zea mays (species)	Published - Accepted by Curator
FASCIATED EAR2	Grain yield (kernel row number)	Unknown, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Bommert P; Nagasawa NS; Jackson D (2013) Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus.	GP00000306	FEA2 Q940E8	Morphology	Not identified	Zea mays (species)	Zea mays (species)	FASCIATED EAR2	Zea mays (species)	Published - Accepted by Curator
grassy tillers1	Plant architecture (number of ears)	Cis-regulatory, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Wills DM; Whipple CJ; Takuno S ; et al. (2013) From many, one: genetic control of prolificacy during maize domestication.	GP00000414	gt1 G1AQA5	Morphology	unknown but narrow 2.7kb interval	Zea mays (species)	Zea mays (species)	grassy tillers1	Zea mays (species)	Published - Accepted by Curator
HM1 = HC toxin reductase (HCTR)	Pathogen resistance	Unknown, Unknown	Zea mays (species)	Domesticated	Candidate Gene	Multani DS; Meeley RB; Paterson AH ; et al. (1998) Plant-pathogen microevolution: molecular basis for the origin of a fungal disease in maize.	GP00000480	hm1 O49163	Physiology	Not identified	Zea mays (species)	Zea mays (species)	HM1 = HC toxin reductase (HCTR)	Zea mays (species)	Published - Accepted by Curator
HM1 = HC toxin reductase (HCTR) [possible pseudo-replicate from other Maize entry]	Pathogen resistance	Coding, Insertion N	Zea mays (species) D	Domesticated	Linkage Mapping	Johal GS; Briggs SP (1992) Reductase activity encoded by the HM1 disease resistance gene in maize. 1 Additional References Multani DS; Meeley RB; Paterson AH (1998) Plant-pathogen microevolution: molecular basis for the origin of a fungal disease in maize.	GP00000481	hm1 O49163	Physiology	256-bp transposable element insertion in exon 4 N	Zea mays (species)	Zea mays (species) D	HM1 = HC toxin reductase (HCTR) [possible pseudo-replicate from other Maize entry]	Zea mays (species)	Published - Accepted by Curator
HM2 = HC toxin reductase (HCTR)	Pathogen resistance	Coding, Deletion N	Zea mays (species) D	Domesticated	Candidate Gene	Chintamanani S; Multani DS; Ruess H ; et al. (2008) Distinct mechanisms govern the dosage-dependent and developmentally regulated resistance conferred b[...]	GP00000482	hm2 B8QWA3	Physiology	deletion from exon 2 (nucleotide 420) to beyond the confines of the hm2 gene into an unknown genomic region. N	Zea mays (species)	Zea mays (species) D	HM2 = HC toxin reductase (HCTR)	Zea mays (species)	Published - Accepted by Curator
HM2 = HC toxin reductase (HCTR)	Pathogen resistance	Coding, Insertion N	Zea mays (species) D	Domesticated	Candidate Gene	Chintamanani S; Multani DS; Ruess H ; et al. (2008) Distinct mechanisms govern the dosage-dependent and developmentally regulated resistance conferred b[...]	GP00000483	hm2 B8QWA3	Physiology	8-bp insertion in exon 1 that disrupt the reading frame and introduces a stop codon shortly after the beginning of the gene N	Zea mays (species)	Zea mays (species) D	HM2 = HC toxin reductase (HCTR)	Zea mays (species)	Published - Accepted by Curator
Lysine histidine transporter 1	Pathogen resistance	Coding, Insertion N	Zea mays (species) D	Domesticated	Linkage Mapping	Zhao Y; Lu X; Liu C ; et al. (2012) Identification and fine mapping of rhm1 locus for resistance to Southern corn leaf blight in maize.	GP00000555	LHT1 Q9FKS8	Physiology	354bp insertioin resulting in premature stop codon N	Zea mays (species)	Zea mays (species) D	Lysine histidine transporter 1	Zea mays (species)	Published - Accepted by Curator
MATE1/ZmMATE1	Metal tolerance	Unknown, Unknown	Zea mays (species)	Domesticated	Candidate Gene	Maron LG; Piñeros MA; Guimarães CT ; et al. (2010) Two functionally distinct members of the MATE (multi-drug and toxic compound extrusion) family of tr[...]	GP00000566		Physiology	unknown	Zea mays (species)	Zea mays (species)	MATE1/ZmMATE1	Zea mays (species)	Published - Accepted by Curator
opaque2 (O2)	Lysine content (endosperm)	Coding, Deletion N	Zea mays (species) D	Domesticated	Linkage Mapping	Schmidt RJ; Burr FA; Burr B (1987) Transposon tagging and molecular analysis of the maize regulatory locus opaque-2. 1 Additional References Hartings H; Lazzaroni N; Rossi V (1995) Molecular analysis of opaque-2 alleles from Zea mays L. reveals the nature of mutational events and [...]	GP00000753	O2 P12959	Physiology	1bp deletion predicted to cause premature termination of translation N	Zea mays (species)	Zea mays (species) D	opaque2 (O2)	Zea mays (species)	Published - Accepted by Curator
opaque2 (O2)	Lysine content (endosperm)	Cis-regulatory, Insertion	Zea mays (species) D	Domesticated	Linkage Mapping	Schmidt RJ; Burr FA; Burr B (1987) Transposon tagging and molecular analysis of the maize regulatory locus opaque-2.	GP00000754	O2 P12959	Physiology	insertion of a non-autonomous rbg transposable element in the untranslated leader sequence of the O2 gene	Zea mays (species)	Zea mays (species) D	opaque2 (O2)	Zea mays (species)	Published - Accepted by Curator
pericarp color1 (P1)	Coloration (seed)	Cis-regulatory, Insertion	Zea mays (species) D	Domesticated	Linkage Mapping	Lechelt C; Peterson T; Laird A ; et al. (1989) Isolation and molecular analysis of the maize P locus.	GP00000859	P1 O24579	Morphology	insertion of transposable element Ac within a large intron; affecting transcripts. The five transcripts found in P-RR plants are absent in P-VV. A chimeric transcript containing part of Ac sequence is found.	Zea mays (species)	Zea mays (species) D	pericarp color1 (P1)	Zea mays (species)	Published - Accepted by Curator
phytoene synthase	Carotenoid content (seed)	Unknown, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Palaisa KA; Morgante M; Williams M ; et al. (2003) Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene sy[...] 1 Additional References Buckner B; Miguel PS; Janick-Buckner D (1996) The y1 gene of maize codes for phytoene synthase.	GP00000875	PSY1 P49085	Physiology	Not identified	Zea mays (species)	Zea mays (species)	phytoene synthase	Zea mays (species)	Published - Accepted by Curator
r1 colored1	Coloration (seeds)	Unknown, Insertion	Zea mays (species) D	Domesticated	Linkage Mapping	Hanson MA; Gaut BS; Stec AO ; et al. (1996) Evolution of anthocyanin biosynthesis in maize kernels: the role of regulatory and enzymatic loci. 1 Additional References Kong Q; Pattanaik S; Feller A (2012) Regulatory switch enforced by basic helix-loop-helix and ACT-domain mediated dimerizations of the ma[...]	GP00000947	Z138B04_Z333J11.11 Q8S483	Morphology	insertion of transposable element Ac	Zea mays (species)	Zea mays (species) D	r1 colored1	Zea mays (species)	Published - Accepted by Curator
Rap2.7 (vgt1)	Flowering time	Cis-regulatory, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Salvi S; Sponza G; Morgante M ; et al. (2007) Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in m[...] 1 Additional References Buckler ES; Holland JB; Bradbury PJ (2009) The genetic architecture of maize flowering time.	GP00000951	RAP2-7 Q9SK03	Physiology	2kb-sequence located 70kb upstream of the Vg1 transcription start site - insertion of a miniature transposon (MITE) belonging to the Tourist family	Zea mays (species)	Zea mays (species)	Rap2.7 (vgt1)	Zea mays (species)	Published - Accepted by Curator
Rp1-D	Pathogen resistance	Gene Amplification, Complex Change	Zea mays (species)	Domesticated	Candidate Gene	Collins N; Drake J; Ayliffe M ; et al. (1999) Molecular characterization of the maize Rp1-D rust resistance haplotype and its mutants. 2 Additional References Sun Q; Collins NC; Ayliffe M (2001) Recombination between paralogues at the Rp1 rust resistance locus in maize. Luo S; Peng J; Li K (2011) Contrasting evolutionary patterns of the Rp1 resistance gene family in different species of Poaceae.	GP00000998	Rp1-D Q9SWU0	Physiology	Unequal crossing over between paralogues resulting in chimeric gene	Zea mays (species)	Zea mays (species)	Rp1-D	Zea mays (species)	Published - Accepted by Curator
Rp3 cluster	Pathogen resistance	Unknown, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Webb CA; Richter TE; Collins NC ; et al. (2002) Genetic and molecular characterization of the maize rp3 rust resistance locus.	GP00000999	rp3-1 Q6PW75	Physiology	unknown	Zea mays (species)	Zea mays (species)	Rp3 cluster	Zea mays (species)	Published - Accepted by Curator
Shattering1 - ZmSh1-1	Seed shattering	Coding, Complex Change	Zea mays (species)	Domesticated	Association Mapping	Lin Z; Li X; Shannon LM ; et al. (2012) Parallel domestication of the Shattering1 genes in cereals.	GP00001043	YAB2 Q10FZ7	Physiology	complex structural variations	Zea mays (species)	Zea mays (species)	Shattering1 - ZmSh1-1	Zea mays (species)	Published - Accepted by Curator
Shattering1 - ZmSh1-5.1 + ZmSh1-5.2	Seed shattering	Coding, Unknown	Zea mays (species)	Domesticated	Association Mapping	Lin Z; Li X; Shannon LM ; et al. (2012) Parallel domestication of the Shattering1 genes in cereals.	GP00001044	YAB2 Q10FZ7	Physiology	various structural variations	Zea mays (species)	Zea mays (species)	Shattering1 - ZmSh1-5.1 + ZmSh1-5.2	Zea mays (species)	Published - Accepted by Curator
shrunken-2 (Sh2) = endosperm ADP-glucose pyrophosphorylase large subunit	Feather	Cis-regulatory, Insertion	Zea mays (species) D	Domesticated	Linkage Mapping	Preiss J; Danner S; Summers PS ; et al. (1990) Molecular Characterization of the Brittle-2 Gene Effect on Maize Endosperm ADPglucose Pyrophosphoryl[...] 1 Additional References Bhave MR; Lawrence S; Barton C (1990) Identification and molecular characterization of shrunken-2 cDNA clones of maize.	GP00001050	SH2 P55241	Physiology	insertion of the transposable element Dissociation	Zea mays (species)	Zea mays (species) D	shrunken-2 (Sh2) = endosperm ADP-glucose pyrophosphorylase large subunit	Zea mays (species)	Published - Accepted by Curator
sugary 1 (su1) = isoamylase-type starch-debranching enzymes	Fruit sugar content	Coding, SNP	Zea mays (species)	Domesticated	Candidate Gene	Dinges JR; Colleoni C; Myers AM ; et al. (2001) Molecular structure of three mutations at the maize sugary1 locus and their allele-specific phenotyp[...] 1 Additional References James MG; Robertson DS; Myers AM (1995) Characterization of the maize gene sugary1, a determinant of starch composition in kernels.	GP00001082	sugary1 O22637	Physiology	F163L and/or W578R; W738R is more likely to be the mutation responsible as it affect a residue conserved in plants and bacteria	Zea mays (species)	Zea mays (species)	sugary 1 (su1) = isoamylase-type starch-debranching enzymes	Zea mays (species)	Published - Accepted by Curator
teosinte branched 1 (tb1)	Plant architecture Inflorescence architecture	Cis-regulatory, Insertion	Zea mays (species) D	Domesticated	Linkage Mapping	Clark RM; Wagler TN; Quijada P ; et al. (2006) A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and[...] 2 Additional References Studer A; Zhao Q; Ross-Ibarra J (2011) Identification of a functional transposon insertion in the maize domestication gene tb1. Studer AJ; Doebley JF (2012) Evidence for a natural allelic series at the maize domestication locus teosinte branched1.	GP00001116	TB1 Q93WI2	Morphology Morphology	Hopscotch TE insertion	Zea mays (species)	Zea mays (species) D	teosinte branched 1 (tb1)	Zea mays (species)	Published - Accepted by Curator
teosinte glume architecture (tga1)	Cupule retraction	Coding, SNP	Zea mays (species)	Domesticated	Linkage Mapping	Wang H; Nussbaum-Wagler T; Li B ; et al. (2005) The origin of the naked grains of maize.	GP00001118	TGA1 Q39237	Morphology	K6N; the lysine residue being conserved in rice and wheat	Zea mays (species)	Zea mays (species)	teosinte glume architecture (tga1)	Zea mays (species)	Published - Accepted by Curator
zfl2	Flowering time	Coding, Deletion	Zea mays (species) D	Domesticated	Linkage Mapping	Buckler ES; Holland JB; Bradbury PJ ; et al. (2009) The genetic architecture of maize flowering time.	GP00001226	zfl2 Q5Q1L6	Physiology	16a.a. deletion	Zea mays (species)	Zea mays (species) D	zfl2	Zea mays (species)	Published - Accepted by Curator
ZmCCT	Flowering time	Cis-regulatory, Insertion	Zea mays (species) D	Domesticated	Linkage Mapping	Ducrocq S; Giauffret C; Madur D ; et al. (2009) Fine mapping and haplotype structure analysis of a major flowering time quantitative trait locus on [...] 2 Additional References Hung HY; Shannon LM; Tian F (2012) ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maiz[...] Yang Q; Li Z; Li W (2013) CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the post[...]	GP00001227	GHD7 E5RQA1	Physiology	insertion of a CACTA-like transposon into the promoter of ZmCCT. This insertion suppresses ZmCCT expression through methylation and reduces maize sensitivity to photoperiod.	Zea mays (species)	Zea mays (species) D	ZmCCT	Zea mays (species)	Published - Accepted by Curator
ZmNAC111	Drought tolerance	Cis-regulatory, Insertion N	Zea mays (species) D	Domesticated	Association Mapping	Yang Q; Li Z; Li W ; et al. (2013) CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the post[...]	GP00002084		Morphology; Physiology	MITE insertion within the ZmCCT promoter which results in histone hypermethylation and represses the expression of NAC; resulting in a higher drought tolerance. N	Zea mays (species)	Zea mays (species) D	ZmNAC111	Zea mays (species)	Published - Accepted by Curator
ZmVPP1	Drought tolerance	Cis-regulatory, Insertion	Zea mays (species)	Intraspecific	Association Mapping	Wang X; Wang H; Liu S ; et al. (2016) Genetic variation in ZmVPP1 contributes to drought tolerance in maize seedlings.	GP00001567	GRMZM2G170927 A0A172DSU8	Physiology	A 366-bp insertion in the promoter containing 3 MYB cis elements confers drought-inducible expression of ZmVPP1 in drought-tolerant genotypes	Zea mays (species)	Zea mays (species)	ZmVPP1	Zea mays (species)	Published - Accepted by Curator