Gephebase

Gephebase Search Results

This Summary Table shows only the major fields for each entry. If you are interested in other fields (gene synonyms, GO terms, molecular details of the mutation, comments, etc.), please export the .csv file, which contains the complete data for each entry. Please click on a GepheID if you want to see all information regarding a particular entry.

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Your research retrieved 15 results.

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Gene	Trait	Mutation	Taxon B	Taxonomic Status	Evidence	Main Reference	Gephe ID	UniProtKB	Trait Category	Mutation Details	Taxon A	Taxon B	Edit Gene-GePhe	Taxon B	Status
opsin - (SWS1)	Color vision	Coding, Deletion N	Mysticeti baleen whales - (suborder) D	Intergeneric or Higher	Candidate Gene	Meredith RW; Gatesy J; Emerling CA ; et al. (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.	GP00000756	OPN1SW P03999	Physiology	4bp frameshift deletion in exon 1 of SWS1 that results in a premature stop codon N	Cetacea whales - (order)	Mysticeti baleen whales - (suborder) D	opsin - (SWS1)	Mysticeti baleen whales - (suborder)	Published - Accepted by Curator
opsin - (SWS1)	Color vision	Coding, SNP	Odontoceti tooth whales - (suborder)	Intergeneric or Higher	Candidate Gene	Meredith RW; Gatesy J; Emerling CA ; et al. (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.	GP00000757	OPN1SW P03999	Physiology	E113G; disrupts opsin-chromophore binding	Cetacea whales - (order)	Odontoceti tooth whales - (suborder)	opsin - (SWS1)	Odontoceti tooth whales - (suborder)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (loss of violet-range sensitivity)	Coding, Deletion N	Sciurus carolinensis gray squirrel - (species) D	Intergeneric or Higher	Candidate Gene	Carvalho Ldos S; Cowing JA; Wilkie SE ; et al. (2006) Shortwave visual sensitivity in tree and flying squirrels reflects changes in lifestyle.	GP00000758	OPN1SW P03999	Physiology	6bp deletion (residues 77-78) + 1bp frameshift deletion N	Sciurus carolinensis gray squirrel - (species)	Sciurus carolinensis gray squirrel - (species) D	opsin - (SWS1)	Sciurus carolinensis gray squirrel - (species)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (loss of violet-range sensitivity)	Coding, Deletion	Sciurus carolinensis gray squirrel - (species) D	Intergeneric or Higher	Candidate Gene	Carvalho Ldos S; Cowing JA; Wilkie SE ; et al. (2006) Shortwave visual sensitivity in tree and flying squirrels reflects changes in lifestyle.	GP00000759	OPN1SW P03999	Physiology	9bp deletion (residues 93-95)	Sciurus carolinensis gray squirrel - (species)	Sciurus carolinensis gray squirrel - (species) D	opsin - (SWS1)	Sciurus carolinensis gray squirrel - (species)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (UV-shift)	2 Mutations: Coding SNP	Melopsittacus undulatus budgerigar - (species) D	Intergeneric or Higher	Candidate Gene	Yokoyama S; Radlwimmer FB; Blow NS (2000) Ultraviolet pigments in birds evolved from violet pigments by a single amino acid change. 1 Additional References Carvalho LS; Cowing JA; Wilkie SE (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments.	GP00000760	OPN1SW P03999	Physiology	2 mutations	Aves birds - (class)	Melopsittacus undulatus budgerigar - (species) D	opsin - (SWS1)	Melopsittacus undulatus budgerigar - (species)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (UV-shift)	2 Mutations: Coding SNP	Rhea americana greater rhea - (species) D	Intergeneric or Higher	Candidate Gene	Odeen A; Hastad O (2003) Complex distribution of avian color vision systems revealed by sequencing the SWS1 opsin from total [...] 2 Additional References Carvalho LS; Cowing JA; Wilkie SE (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments. Wright MW; Bowmaker JK (2001) Retinal photoreceptors of paleognathous birds: the ostrich (Struthio camelus) and rhea (Rhea america[...]	GP00000761	OPN1SW P03999	Physiology	2 mutations	Aves birds - (class)	Rhea americana greater rhea - (species) D	opsin - (SWS1)	Rhea americana greater rhea - (species)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (UV-shift)	2 Mutations: Coding SNP	Larus (genus) D	Intergeneric or Higher	Candidate Gene	Odeen A; Hastad O (2003) Complex distribution of avian color vision systems revealed by sequencing the SWS1 opsin from total [...] 1 Additional References Carvalho LS; Cowing JA; Wilkie SE (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments.	GP00000762	OPN1SW P03999	Physiology	2 mutations	Aves birds - (class)	Larus (genus) D	opsin - (SWS1)	Larus (genus)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (UV-shift)	Coding, SNP	Trogon curucui (species) D	Intergeneric or Higher	Candidate Gene	Odeen A; Hastad O (2003) Complex distribution of avian color vision systems revealed by sequencing the SWS1 opsin from total [...] 1 Additional References Carvalho LS; Cowing JA; Wilkie SE (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments.	GP00000763	OPN1SW P03999	Physiology	S86F	Aves birds - (class)	Trogon curucui (species) D	opsin - (SWS1)	Trogon curucui (species)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (UV-shift)	Coding, SNP	Taeniopygia guttata zebra finch - (species)	Intergeneric or Higher	Candidate Gene	Yokoyama S; Radlwimmer FB; Blow NS (2000) Ultraviolet pigments in birds evolved from violet pigments by a single amino acid change. 1 Additional References Carvalho LS; Cowing JA; Wilkie SE (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments.	GP00000764	OPN1SW P03999	Physiology	S90C	Passeriformes (order)	Taeniopygia guttata zebra finch - (species)	opsin - (SWS1)	Taeniopygia guttata zebra finch - (species)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (violet-shift)	3 Mutations: Coding SNP	Xenopus laevis African clawed frog - (species) D	Intergeneric or Higher	Candidate Gene	Takahashi Y; Yokoyama S (2005) Genetic basis of spectral tuning in the violet-sensitive visual pigment of African clawed frog, Xeno[...]	GP00000765	OPN1SW P03999	Physiology	3 mutations	Amniota amniotes - (no rank)	Xenopus laevis African clawed frog - (species) D	opsin - (SWS1)	Xenopus laevis African clawed frog - (species)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (violet-shift)	Coding, SNP	Macropodidae (family)	Intergeneric or Higher	Candidate Gene	Deeb SS; Wakefield MJ; Tada T ; et al. (2003) The cone visual pigments of an Australian marsupial, the tammar wallaby (Macropus eugenii): sequence[...] 1 Additional References Arrese CA; Oddy AY; Runham PB (2005) Cone topography and spectral sensitivity in two potentially trichromatic marsupials, the quokka (Set[...]	GP00000766	OPN1SW P03999	Physiology	F86Y	Metatheria marsupials - (no rank)	Macropodidae (family)	opsin - (SWS1)	Macropodidae (family)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (violet-shift)	Coding, SNP	Cavia porcellus domestic guinea pig - (species)	Intergeneric or Higher	Candidate Gene	Parry JW; Poopalasundaram S; Bowmaker JK ; et al. (2004) A novel amino acid substitution is responsible for spectral tuning in a rodent violet-sensitive visu[...]	GP00000767	OPN1SW P03999	Physiology	F86V	Rodentia rodent - (order)	Cavia porcellus domestic guinea pig - (species)	opsin - (SWS1)	Cavia porcellus domestic guinea pig - (species)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (violet-shift)	Coding, SNP	Sciurus carolinensis gray squirrel - (species)	Intergeneric or Higher	Candidate Gene	Carvalho Ldos S; Cowing JA; Wilkie SE ; et al. (2006) Shortwave visual sensitivity in tree and flying squirrels reflects changes in lifestyle.	GP00000768	OPN1SW P03999	Physiology	F86Y	Rodentia rodent - (order)	Sciurus carolinensis gray squirrel - (species)	opsin - (SWS1)	Sciurus carolinensis gray squirrel - (species)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (UV-shift)	Coding, SNP	Aves birds - (class) D	Intergeneric or Higher	Candidate Gene	Carvalho LS; Cowing JA; Wilkie SE ; et al. (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments. 1 Additional References Carvalho LS; Cowing JA; Wilkie SE (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments.	GP00001694	OPN1SW P03999	Physiology	V116L	Vertebrata vertebrates - (no rank)	Aves birds - (class) D	opsin - (SWS1)	Aves birds - (class)	Published - Accepted by Curator
opsin - (SWS1)	Color vision (violet-shift)	Coding, Deletion	Lepidopus fitchi (species) D	Intergeneric or Higher	Candidate Gene	Tada T; Altun A; Yokoyama S (2009) Evolutionary replacement of UV vision by violet vision in fish.	GP00001704	OPN1SW P03999	Physiology	deletion of Phe86 (3-bp deletion)	Actinopterygii ray-finned fishes - (superclass)	Lepidopus fitchi (species) D	opsin - (SWS1)	Lepidopus fitchi (species)	Published - Accepted by Curator