Gephebase

Gephebase Search Results

This Summary Table shows only the major fields for each entry. If you are interested in other fields (gene synonyms, GO terms, molecular details of the mutation, comments, etc.), please export the .csv file, which contains the complete data for each entry. Please click on a GepheID if you want to see all information regarding a particular entry.

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Your research retrieved 15 results.

Gene	Trait	Mutation	Taxon B	Taxonomic Status	Evidence	Main Reference
ABCA1	Cholesterol metabolism Coloration	Coding, SNP N	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Attie AD; Hamon Y; Brooks-Wilson AR ; et al. (2002) Identification and functional analysis of a naturally occurring E89K mutation in the ABCA1 gene of t[...]
Agouti (ASIP)	Coloration	Cis-regulatory, Unknown	Gallus gallus chicken - (species)	Domesticated	Candidate Gene	Yu S; Wang G; Liao J (2019) Association of a novel SNP in the ASIP gene with skin color in black-bone chicken.
CDKN2A	Coloration	4 Mutations:	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Schwochow Thalmann D; Ring H; Sundström E ; et al. (2017) The evolution of Sex-linked barring alleles in chickens involves both regulatory and coding changes [...] 1 Additional References Hellström AR; Sundström E; Gunnarsson U (2010) Sex-linked barring in chickens is controlled by the CDKN2A /B tumour suppressor locus.
CYP19A1	Coloration	Cis-regulatory, Insertion	Gallus gallus chicken - (species) D	Domesticated	Candidate Gene	Li J; Davis BW; Jern P ; et al. (2019) Characterization of the endogenous retrovirus insertion in CYP19A1 associated with henny feathering [...]
EDN3	Coloration	Gene Amplification, Complex Change	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Dorshorst B; Molin AM; Rubin CJ ; et al. (2011) A complex genomic rearrangement involving the endothelin 3 locus causes dermal hyperpigmentation in [...] 3 Additional References Johansson AM; Nelson RM (2015) Characterization of genetic diversity and gene mapping in two Swedish local chicken breeds. Han R; Yang P; Tian Y (2014) Identification and functional characterization of copy number variations in diverse chicken breeds. Dharmayanthi AB; Terai Y; Sulandari S (2017) The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesia[...]
Endothelin receptor B2	Coloration	2 Mutations: Coding, SNP	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Kinoshita K; Akiyama T; Mizutani M ; et al. (2014) Endothelin receptor B2 (EDNRB2) is responsible for the tyrosinase-independent recessive white (mo(w)[...]
GRAMD3	Coloration	Cis-regulatory, Unknown	Gallus gallus chicken - (species)	Domesticated	Association Mapping	Xu J; Lin S; Gao X ; et al. (2017) Mapping of Id locus for dermal shank melanin in a Chinese indigenous chicken breed.
MC1R	Coloration	6 Mutations: Coding, SNP	Gallus gallus chicken - (species)	Domesticated	Mixed	3 References
Melanophilin (MLPH)	Coloration	Coding, SNP	Gallus gallus chicken - (species) D	Domesticated	Candidate Gene	Vaez M; Follett SA; Bed'hom B ; et al. (2008) A single point-mutation within the melanophilin gene causes the lavender plumage colour dilution phe[...]
PMEL17	Coloration	3 Mutations: Coding,	Gallus gallus chicken - (species) D	Domesticated	Mixed	Kerje S; Sharma P; Gunnarsson U ; et al. (2004) The Dominant white, Dun and Smoky color variants in chicken are associated with insertion/deletion p[...]
SLC45A2=MATP	Coloration	3 Mutations: Coding, N	Gallus gallus chicken - (species) D	Domesticated	Mixed	Gunnarsson U; Hellström AR; Tixier-Boichard M ; et al. (2007) Mutations in SLC45A2 cause plumage color variation in chicken and Japanese quail.
SLCO1B3	Coloration	2 Mutations: Cis-regulatory, Insertion	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Wang Z; Qu L; Yao J ; et al. (2013) An EAV-HP insertion in 5' Flanking region of SLCO1B3 causes blue eggshell in the chicken.
SOX10	Coloration	Cis-regulatory, Deletion	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Gunnarsson U; Kerje S; Bed'hom B ; et al. (2011) The Dark brown plumage color in chickens is caused by an 8.3-kb deletion upstream of SOX10. 1 Additional References Zhu T; Liu M; Peng S (2022) A Deletion Upstream of SOX10 Causes Light Yellow Plumage Colour in Chicken.
tyrosinase (TYR)	Coloration	2 Mutations: Coding,	Gallus gallus chicken - (species) D	Domesticated	Candidate Gene	2 References
tyrosinase-related protein 1 (TYRP1)	Coloration	Coding, SNP	Gallus gallus chicken - (species)	Domesticated	Linkage Mapping	Li J; Bed'hom B; Marthey S ; et al. (2019) A missense mutation in TYRP1 causes the chocolate plumage color in chicken and alters melanosome str[...]