Gephebase

Gephebase Search Results

This Summary Table shows only the major fields for each entry. If you are interested in other fields (gene synonyms, GO terms, molecular details of the mutation, comments, etc.), please export the .csv file, which contains the complete data for each entry. Please click on a GepheID if you want to see all information regarding a particular entry.

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Your research retrieved 15 results.

Gene	Trait	Mutation	Taxon B	Taxonomic Status	Evidence	Main Reference
ABCA1	Cholesterol metabolism Coloration	Coding, SNP N	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Attie AD; Hamon Y; Brooks-Wilson AR ; et al. (2002) Identification and functional analysis of a naturally occurring E89K mutation in the ABCA1 gene of t[...]
CDKN2A	Coloration	4 Mutations:	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Schwochow Thalmann D; Ring H; Sundström E ; et al. (2017) The evolution of Sex-linked barring alleles in chickens involves both regulatory and coding changes [...] 1 Additional References Hellström AR; Sundström E; Gunnarsson U (2010) Sex-linked barring in chickens is controlled by the CDKN2A /B tumour suppressor locus.
CYP19A1	Coloration	Cis-regulatory, Insertion	Gallus gallus chicken - (species) D	Domesticated	Candidate Gene	Li J; Davis BW; Jern P ; et al. (2019) Characterization of the endogenous retrovirus insertion in CYP19A1 associated with henny feathering [...]
Endothelin receptor B2	Coloration	2 Mutations: Coding, SNP	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Kinoshita K; Akiyama T; Mizutani M ; et al. (2014) Endothelin receptor B2 (EDNRB2) is responsible for the tyrosinase-independent recessive white (mo(w)[...]
MC1R	Coloration	6 Mutations: Coding, SNP	Gallus gallus chicken - (species)	Domesticated	Mixed	3 References
PMEL17	Coloration	3 Mutations: Coding,	Gallus gallus chicken - (species) D	Domesticated	Mixed	Kerje S; Sharma P; Gunnarsson U ; et al. (2004) The Dominant white, Dun and Smoky color variants in chicken are associated with insertion/deletion p[...]
SLC45A2=MATP	Coloration	3 Mutations: Coding, N	Gallus gallus chicken - (species) D	Domesticated	Mixed	Gunnarsson U; Hellström AR; Tixier-Boichard M ; et al. (2007) Mutations in SLC45A2 cause plumage color variation in chicken and Japanese quail.
SOX10	Coloration	Cis-regulatory, Deletion	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Gunnarsson U; Kerje S; Bed'hom B ; et al. (2011) The Dark brown plumage color in chickens is caused by an 8.3-kb deletion upstream of SOX10. 1 Additional References Zhu T; Liu M; Peng S (2022) A Deletion Upstream of SOX10 Causes Light Yellow Plumage Colour in Chicken.
tyrosinase (TYR)	Coloration	2 Mutations: Coding,	Gallus gallus chicken - (species) D	Domesticated	Candidate Gene	2 References
tyrosinase-related protein 1 (TYRP1)	Coloration	Coding, SNP	Gallus gallus chicken - (species)	Domesticated	Linkage Mapping	Li J; Bed'hom B; Marthey S ; et al. (2019) A missense mutation in TYRP1 causes the chocolate plumage color in chicken and alters melanosome str[...]
FGF20	Organ loss	Coding, SNP N	Gallus gallus chicken - (species) D	Domesticated	Association Mapping	Wells KL; Hadad Y; Ben-Avraham D ; et al. (2012) Genome-wide SNP scan of pooled DNA reveals nonsense mutation in FGF20 in the scaleless line of feath[...]
GDF7	Feathers	Cis-regulatory, Insertion	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Mou C; Pitel F; Gourichon D ; et al. (2011) Cryptic patterning of avian skin confers a developmental facility for loss of neck feathering.
HOXC8 - uncertain	Feathers	Cis-regulatory, Unknown	Gallus gallus chicken - (species)	Domesticated	Association Mapping	Wang Y; Gao Y; Imsland F ; et al. (2012) The crest phenotype in chicken is associated with ectopic expression of HOXC8 in cranial skin.
KRT6A	Feathers	Coding, Deletion	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Ng CS; Wu P; Foley J ; et al. (2012) The chicken frizzle feather is due to an α-keratin (KRT75) mutation that causes a defective rachis.
KRT75L4	Feathers	Coding, Deletion	Gallus gallus chicken - (species) D	Domesticated	Association Mapping	Guo X; Li YQ; Wang MS ; et al. (2018) A parallel mechanism underlying frizzle in domestic chickens.