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Gephebase Search Results

This Summary Table shows only the major fields for each entry. If you are interested in other fields (gene synonyms, GO terms, molecular details of the mutation, comments, etc.), please export the .csv file, which contains the complete data for each entry. Please click on a GepheID if you want to see all information regarding a particular entry.

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Your research retrieved 47 results.

Gene	Trait	Mutation	Taxon B	Taxonomic Status	Evidence	Main Reference
Green-sensitive opsin (RH2)	Color vision	Coding, SNP	Thunnus orientalis Pacific bluefin tuna - (species) D	Intergeneric or Higher	Candidate Gene	Nakamura Y; Mori K; Saitoh K ; et al. (2013) Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna[...]
Rhodopsin (RH1)	Color vision	Coding, SNP	Thunnus orientalis Pacific bluefin tuna - (species) D	Intergeneric or Higher	Candidate Gene	Nakamura Y; Mori K; Saitoh K ; et al. (2013) Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna[...]
Green-sensitive opsin (RH2)	Color vision	2 Mutations: Gene Loss, Deletion N	Sinocyclocheilus anshuiensis (species) D Sinocyclocheilus grahami (species) D Sinocyclocheilus rhinocerous (species) D	Interspecific	Candidate Gene	Yang J; Chen X; Bai J ; et al. (2016) The Sinocyclocheilus cavefish genome provides insights into cave adaptation.
opsin - rhodopsin (LWS)	Color vision	Gene Loss, Deletion N	Sinocyclocheilus anshuiensis (species) D Sinocyclocheilus grahami (species) D Sinocyclocheilus rhinocerous (species) D	Interspecific	Candidate Gene	Yang J; Chen X; Bai J ; et al. (2016) The Sinocyclocheilus cavefish genome provides insights into cave adaptation.
Green-sensitive opsin (RH2)	Color vision	Gene Loss, Deletion N	Sinocyclocheilus anshuiensis (species) D	Interspecific	Candidate Gene	Yang J; Chen X; Bai J ; et al. (2016) The Sinocyclocheilus cavefish genome provides insights into cave adaptation.
opsin - (SWS1)	Color vision	Coding, Deletion N	Mysticeti baleen whales - (suborder) D	Intergeneric or Higher	Candidate Gene	Meredith RW; Gatesy J; Emerling CA ; et al. (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.
opsin - (SWS1)	Color vision	Coding, SNP	Odontoceti tooth whales - (suborder)	Intergeneric or Higher	Candidate Gene	Meredith RW; Gatesy J; Emerling CA ; et al. (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.
opsin - rhodopsin (LWS)	Color vision	Coding, Deletion N	Balaenopteridae rorquals - (family) D	Intergeneric or Higher	Candidate Gene	Meredith RW; Gatesy J; Emerling CA ; et al. (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.
opsin - rhodopsin (LWS)	Color vision	Coding, Deletion N	Kogia breviceps pygmy sperm whale - (species) D	Intergeneric or Higher	Candidate Gene	Meredith RW; Gatesy J; Emerling CA ; et al. (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.
opsin - rhodopsin (LWS)	Color vision	Coding, Deletion N	Physeter catodon sperm whale - (species) D	Intergeneric or Higher	Candidate Gene	Meredith RW; Gatesy J; Emerling CA ; et al. (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.
opsin - rhodopsin (LWS)	Color vision	Coding, Insertion N	Mesoplodon bidens Sowerby's beaked whale - (species) D	Intergeneric or Higher	Candidate Gene	Meredith RW; Gatesy J; Emerling CA ; et al. (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.
opsin - rhodopsin (LWS)	Color vision	Coding, SNP	Balaenidae right whales - (family)	Intergeneric or Higher	Candidate Gene	Meredith RW; Gatesy J; Emerling CA ; et al. (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.
opsin - rhodopsin1 (RH1)	Color vision	Coding, SNP	Physeteridae sperm whales - (family)	Intergeneric or Higher	Candidate Gene	Meredith RW; Gatesy J; Emerling CA ; et al. (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.
opsin - (SWS1)	Color vision	2 Mutations: Coding, Deletion,	Sciurus carolinensis gray squirrel - (species) D	Intergeneric or Higher	Candidate Gene	Carvalho Ldos S; Cowing JA; Wilkie SE ; et al. (2006) Shortwave visual sensitivity in tree and flying squirrels reflects changes in lifestyle.
opsin - (SWS1)	Color vision	2 Mutations: Coding, SNP	Melopsittacus undulatus budgerigar - (species) D	Intergeneric or Higher	Candidate Gene	Yokoyama S; Radlwimmer FB; Blow NS (2000) Ultraviolet pigments in birds evolved from violet pigments by a single amino acid change. 1 Additional References Carvalho LS; Cowing JA; Wilkie SE (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments.
opsin - (SWS1)	Color vision	2 Mutations: Coding, SNP	Rhea americana greater rhea - (species) D	Intergeneric or Higher	Candidate Gene	Odeen A; Hastad O (2003) Complex distribution of avian color vision systems revealed by sequencing the SWS1 opsin from total [...] 2 Additional References Carvalho LS; Cowing JA; Wilkie SE (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments. Wright MW; Bowmaker JK (2001) Retinal photoreceptors of paleognathous birds: the ostrich (Struthio camelus) and rhea (Rhea america[...]
opsin - (SWS1)	Color vision	2 Mutations: Coding, SNP	Larus (genus) D	Intergeneric or Higher	Candidate Gene	Odeen A; Hastad O (2003) Complex distribution of avian color vision systems revealed by sequencing the SWS1 opsin from total [...] 1 Additional References Carvalho LS; Cowing JA; Wilkie SE (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments.
opsin - (SWS1)	Color vision	Coding, SNP	Trogon curucui (species) D	Intergeneric or Higher	Candidate Gene	Odeen A; Hastad O (2003) Complex distribution of avian color vision systems revealed by sequencing the SWS1 opsin from total [...] 1 Additional References Carvalho LS; Cowing JA; Wilkie SE (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments.
opsin - (SWS1)	Color vision	Coding, SNP	Taeniopygia guttata zebra finch - (species)	Intergeneric or Higher	Candidate Gene	Yokoyama S; Radlwimmer FB; Blow NS (2000) Ultraviolet pigments in birds evolved from violet pigments by a single amino acid change. 1 Additional References Carvalho LS; Cowing JA; Wilkie SE (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments.
opsin - (SWS1)	Color vision	3 Mutations: Coding, SNP	Xenopus laevis African clawed frog - (species) D	Intergeneric or Higher	Candidate Gene	Takahashi Y; Yokoyama S (2005) Genetic basis of spectral tuning in the violet-sensitive visual pigment of African clawed frog, Xeno[...]
opsin - rhodopsin1 (RH1)	Color vision	Coding, SNP	Squamata squamates - (order) D	Intergeneric or Higher	Candidate Gene	Yokoyama S; Zhang H; Radlwimmer FB ; et al. (1999) Adaptive evolution of color vision of the Comoran coelacanth (Latimeria chalumnae). 1 Additional References Yokoyama S; Tada T; Zhang H (2008) Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrate[...]
opsin - (SWS1)	Color vision	Coding, SNP	Macropodidae (family)	Intergeneric or Higher	Candidate Gene	Deeb SS; Wakefield MJ; Tada T ; et al. (2003) The cone visual pigments of an Australian marsupial, the tammar wallaby (Macropus eugenii): sequence[...] 1 Additional References Arrese CA; Oddy AY; Runham PB (2005) Cone topography and spectral sensitivity in two potentially trichromatic marsupials, the quokka (Set[...]
opsin - (SWS1)	Color vision	Coding, SNP	Cavia porcellus domestic guinea pig - (species)	Intergeneric or Higher	Candidate Gene	Parry JW; Poopalasundaram S; Bowmaker JK ; et al. (2004) A novel amino acid substitution is responsible for spectral tuning in a rodent violet-sensitive visu[...]
opsin - (SWS1)	Color vision	Coding, SNP	Sciurus carolinensis gray squirrel - (species)	Intergeneric or Higher	Candidate Gene	Carvalho Ldos S; Cowing JA; Wilkie SE ; et al. (2006) Shortwave visual sensitivity in tree and flying squirrels reflects changes in lifestyle.
opsin - (SWS1)	Color vision	Coding, SNP	Aves birds - (class) D	Intergeneric or Higher	Candidate Gene	Carvalho LS; Cowing JA; Wilkie SE ; et al. (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments. 1 Additional References Carvalho LS; Cowing JA; Wilkie SE (2007) The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments.
opsin - (SWS1)	Color vision	Coding, Deletion	Lepidopus fitchi (species) D	Intergeneric or Higher	Candidate Gene	Tada T; Altun A; Yokoyama S (2009) Evolutionary replacement of UV vision by violet vision in fish.
opsin - (SWS2)	Color vision	2 Mutations: Coding, SNP	Gasterosteus aculeatus three-spined stickleback - (species)	Intraspecific	Candidate Gene	Marques DA; Taylor JS; Jones FC ; et al. (2017) Convergent evolution of SWS2 opsin facilitates adaptive radiation of threespine stickleback into dif[...]
opsin - (SWS2)	Color vision	3 Mutations: Coding, SNP	Cottus gobio bullhead - (species) D	Intergeneric or Higher	Candidate Gene	Cowing JA; Poopalasundaram S; Wilkie SE ; et al. (2002) Spectral tuning and evolution of short wave-sensitive cone pigments in cottoid fish from Lake Baikal[...]
opsin - (SWS2B)	Color vision	Coding, SNP	Tramitichromis intermedius (species)	Interspecific	Candidate Gene	O'Quin KE; Schulte JE; Patel Z ; et al. (2012) Evolution of cichlid vision via trans-regulatory divergence.
Rx1	Color vision	Cis-regulatory, Indel	Tramitichromis intermedius (species)	Interspecific	Linkage Mapping	Schulte JE; O'Brien CS; Conte MA ; et al. (2014) Interspecific variation in Rx1 expression controls opsin expression and causes visual system diversi[...]
opsin - rhodopsin (LWS)	Color vision	Coding, SNP	Neochromis greenwoodi (species)	Interspecific	Candidate Gene	Terai Y; Seehausen O; Sasaki T ; et al. (2006) Divergent selection on opsins drives incipient speciation in Lake Victoria cichlids.
opsin - rhodopsin1 (RH1)	Color vision	Coding, SNP	African cichlids (no rank)	Intergeneric or Higher	Candidate Gene	Sugawara T; Terai Y; Imai H ; et al. (2005) Parallelism of amino acid changes at the RH1 affecting spectral sensitivity among deep-water cichlid[...] 1 Additional References Nagai H; Terai Y; Sugawara T (2011) Reverse evolution in RH1 for adaptation of cichlids to water depth in Lake Tanganyika.
opsin - rhodopsin (LWS)	Color vision	3 Mutations: Coding, SNP	Pundamilia pundamilia (species)	Intraspecific	Candidate Gene	Seehausen O; Terai Y; Magalhaes IS ; et al. (2008) Speciation through sensory drive in cichlid fish.
opsin - rhodopsin (LWS)	Color vision	Coding, SNP	Tursiops truncatus bottlenose dolphin - (species) D	Intergeneric or Higher	Candidate Gene	Fasick JI; Robsinson PR (1998) Mechanism of spectral tuning in the dolphin visual pigments.
opsin - rhodopsin1 (RH1)	Color vision	3 Mutations: Coding, SNP	Tursiops truncatus bottlenose dolphin - (species)	Intergeneric or Higher	Candidate Gene	Fasick JI; Robsinson PR (1998) Mechanism of spectral tuning in the dolphin visual pigments. 2 Additional References Sugawara T; Imai H; Nikaido M (2010) Vertebrate rhodopsin adaptation to dim light via rapid meta-II intermediate formation. Yokoyama S; Tada T; Zhang H (2008) Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrate[...]
opsin - rhodopsin1 (RH1)	Color vision	Coding, SNP	Elephantidae elephants - (family)	Intergeneric or Higher	Candidate Gene	Yokoyama S; Takenaka N; Agnew DW ; et al. (2005) Elephants and human color-blind deuteranopes have identical sets of visual pigments. 1 Additional References Yokoyama S; Tada T; Zhang H (2008) Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrate[...]
opsin - rhodopsin1 (RH1)	Color vision	2 Mutations: Coding, SNP	Cetacea whales - (order)	Intergeneric or Higher	Candidate Gene	Meredith RW; Gatesy J; Emerling CA ; et al. (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.
opsin - rhodopsin (MWS=duplicate of LWS)	Color vision	7 Mutations: Coding, SNP	Catarrhini (parvorder)	Intergeneric or Higher	Candidate Gene	Asenjo AB; Rim J; Oprian DD (1994) Molecular determinants of human red/green color discrimination. 1 Additional References Hunt DM; Dulai KS; Cowing JA (1998) Molecular evolution of trichromacy in primates.
opsin - rhodopsin1 (RH1)	Color vision	2 Mutations: Coding, SNP	undetermined Cottoidei 'Lake Baikal' (species)	Intergeneric or Higher	Candidate Gene	Hunt DM; Fitzgibbon J; Slobodyanyuk SJ ; et al. (1996) Spectral tuning and molecular evolution of rod visual pigments in the species flock of cottoid fish [...]
opsin - rhodopsin1 (RH1)	Color vision	Coding, SNP	Megaderma lyra Indian false vampire - (species) D	Intergeneric or Higher	Candidate Gene	Sugawara T; Imai H; Nikaido M ; et al. (2010) Vertebrate rhodopsin adaptation to dim light via rapid meta-II intermediate formation.
opsin - rhodopsin1 (RH1)	Color vision	2 Mutations: Coding, SNP	Sebastolobus altivelis (species) D	Intergeneric or Higher	Candidate Gene	Yokoyama S; Tada T; Yamato T (2007 Mar-Apr) Modulation of the absorption maximum of rhodopsin by amino acids in the C-terminus. 1 Additional References Yokoyama S; Tada T; Zhang H (2008) Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrate[...]
opsin - rhodopsin1 (RH1)	Color vision	2 Mutations: Coding, SNP	Latimeria menadoensis Menado coelacanth - (species) D Latimeria chalumnae coelacanth - (species) D	Intergeneric or Higher	Candidate Gene	Yokoyama S; Tada T (2000) Adaptive evolution of the African and Indonesian coelacanths to deep-sea environments.
opsin - rhodopsin1 (RH1)	Color vision	Coding, SNP	Flaveria trinervia (species)	Intergeneric or Higher	Candidate Gene	Sugawara T; Imai H; Nikaido M ; et al. (2010) Vertebrate rhodopsin adaptation to dim light via rapid meta-II intermediate formation.
opsin - rhodopsin1 (RH1)	Color vision	2 Mutations: Coding, SNP	Orcinus orca killer whale - (species) D	Intergeneric or Higher	Candidate Gene	Dungan SZ; Kosyakov A; Chang BS (2016) Spectral Tuning of Killer Whale (Orcinus orca) Rhodopsin: Evidence for Positive Selection and Functi[...] 1 Additional References Meredith RW; Gatesy J; Emerling CA (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.
opsin - rhodopsin1 (RH1)	Color vision	Coding, SNP	Aristostomias scintillans shiny loosejaw - (species)	Intergeneric or Higher	Candidate Gene	Yokoyama S; Tada T; Zhang H ; et al. (2008) Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrate[...] 1 Additional References Yokoyama S (2012) Synthesis of Experimental Molecular Biology and Evolutionary Biology: An Example from the World of V[...]
opsin - rhodopsin1-A (RH1-A)	Color vision	3 Mutations: Coding, SNP	Conger myriaster whitespotted conger - (species) D	Intergeneric or Higher	Candidate Gene	Yokoyama S; Tada T; Zhang H ; et al. (2008) Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrate[...]
opsin - rhodopsin1-B (RH1-B)	Color vision	Coding, SNP	Anguilla japonica Japanese eel - (species) D	Intergeneric or Higher	Candidate Gene	Yokoyama S; Takenaka N; Agnew DW ; et al. (2005) Elephants and human color-blind deuteranopes have identical sets of visual pigments. 1 Additional References Yokoyama S; Tada T; Zhang H (2008) Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrate[...]