GEPHE SUMMARY Print
Gephebase Gene
Entry Status
Published
GepheID
GP00001028
Main curator
Martin
PHENOTYPIC CHANGE
Trait Category
Trait State in Taxon A
Oryza sativa var. Koshihikari
Trait State in Taxon B
Oryza sativa var. Habataki and IR8
Ancestral State
Taxon A
Taxonomic Status
Taxon A
Latin Name
Common Name
rice
Synonyms
rice; red rice; Oryza sativa L.
Rank
species
Lineage
Show more ... ytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
NCBI Taxonomy ID
is Taxon A an Infraspecies?
Yes
Taxon A Description
Oryza sativa var. Koshihikari
Taxon B
Latin Name
Common Name
rice
Synonyms
rice; red rice; Oryza sativa L.
Rank
species
Lineage
Show more ... ytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
NCBI Taxonomy ID
is Taxon B an Infraspecies?
Yes
Taxon B Description
Oryza sativa var. Habataki and IR8
GENOTYPIC CHANGE
Generic Gene Name
GA20OX2
Synonyms
sd1; GA20; Sd-1; 20ox2; C20ox2; SD1-2E; Os20ox2; osGA20ox2; SD1; Os01g0883800; LOC_Os01g66100; B1065E10.46
Sequence Similarities
Belongs to the iron/ascorbate-dependent oxidoreductase family. GA20OX subfamily.
GO - Biological Process
-
GO - Cellular Component
-
UniProtKB
Oryza sativa subsp. japonica
GenebankID or UniProtKB
Presumptive Null
Yes
Molecular Type
Aberration Type
Deletion Size
100-999 bp
Molecular Details of the Mutation
383bp deletion introducing premature stop codon
Experimental Evidence
Authors
Sasaki A; Ashikari M; Ueguchi-Tanaka M; Itoh H; Nishimura A; Swapan D; Ishiyama K; Saito T; et al. ... show more
Abstract
The chronic food shortage that was feared after the rapid expansion of the world population in the 1960s was averted largely by the development of a high-yielding semi-dwarf variety of rice known as IR8, the so-called rice 'green revolution'. The short stature of IR8 is due to a mutation in the plant's sd1 gene, and here we identify this gene as encoding an oxidase enzyme involved in the biosynthesis of gibberellin, a plant growth hormone. Gibberellin is also implicated in green-revolution varieties of wheat, but the reduced height of those crops is conferred by defects in the hormone's signalling pathway.
RELATED GEPHE
Related Genes
No matches found.
Related Haplotypes
4
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