GEPHE SUMMARY Print
Gephebase Gene
Entry Status
Published
GepheID
GP00001346
Main curator
Prigent
PHENOTYPIC CHANGE
Trait Category
Trait State in Taxon A
Lion-Wild type
Trait State in Taxon B
Lion-white coat
Ancestral State
Taxon A
Taxonomic Status
Taxon A
Latin Name
Common Name
lion
Synonyms
Leo leo; lion
Rank
species
Lineage
Show more ... ata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
NCBI Taxonomy ID
is Taxon A an Infraspecies?
No
Taxon B
Latin Name
Common Name
lion
Synonyms
Leo leo; lion
Rank
species
Lineage
Show more ... ata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
NCBI Taxonomy ID
is Taxon B an Infraspecies?
No
GENOTYPIC CHANGE
Presumptive Null
No
Molecular Type
Aberration Type
SNP
SNP Coding Change
Nonsynonymous
Molecular Details of the Mutation
c.260G>A p.Arg87Gln
Experimental Evidence
Taxon A Taxon B Position
Codon - - -
Amino-acid Arg Gln 87
Authors
Cho YS; Hu L; Hou H; Lee H; Xu J; Kwon S; Oh S; Kim HM; et al. ... show more
Abstract
Tigers and their close relatives (Panthera) are some of the world's most endangered species. Here we report the de novo assembly of an Amur tiger whole-genome sequence as well as the genomic sequences of a white Bengal tiger, African lion, white African lion and snow leopard. Through comparative genetic analyses of these genomes, we find genetic signatures that may reflect molecular adaptations consistent with the big cats' hypercarnivorous diet and muscle strength. We report a snow leopard-specific genetic determinant in EGLN1 (Met39>Lys39), which is likely to be associated with adaptation to high altitude. We also detect a TYR260G>A mutation likely responsible for the white lion coat colour. Tiger and cat genomes show similar repeat composition and an appreciably conserved synteny. Genomic data from the five big cats provide an invaluable resource for resolving easily identifiable phenotypes evident in very close, but distinct, species.
Additional References
RELATED GEPHE
Related Genes
No matches found.
Related Haplotypes
No matches found.
EXTERNAL LINKS
COMMENTS
@Parallelism https://omia.org/OMIA000202/9689/
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