GEPHE SUMMARY
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Gephebase Gene
Entry Status
Published
GepheID
GP00001540
Main curator
Courtier
PHENOTYPIC CHANGE
Trait #1
Trait Category
Trait
Trait State in Taxon A
Indica variety HJX74 with shorter and wider grains of lower quality (?)
Trait State in Taxon B
line TaifengA (TFA) derived from japonica variety Mi31 with slender grains and better grain quality
Trait #2
Trait Category
Trait
Trait State in Taxon A
-
Trait State in Taxon B
-
Ancestral State
Unknown
Taxonomic Status
Taxon A
Latin Name
Common Name
rice
Synonyms
rice; red rice; Oryza sativa L.
Rank
species
Lineage
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ytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Parent
NCBI Taxonomy ID
is Taxon A an Infraspecies?
Yes
Taxon A Description
Indica variety HJX74 with shorter and wider grains of lower quality (?)
Taxon B
Latin Name
Common Name
rice
Synonyms
rice; red rice; Oryza sativa L.
Rank
species
Lineage
Show more ...
ytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Parent
NCBI Taxonomy ID
is Taxon B an Infraspecies?
Yes
Taxon B Description
Rice line TaifengA (TFA) derived from japonica variety Mi31 with slender grains and better grain quality
GENOTYPIC CHANGE
Generic Gene Name
TON1A
Synonyms
T15C9.7; TON1; TONNEAU 1; TONNEAU 1A; At3g55000; F28P10
String
Sequence Similarities
-
GO - Molecular Function
-
GO - Biological Process
GO:0030865 : cortical cytoskeleton organization
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GO - Cellular Component
GO:0005886 : plasma membrane
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UniProtKB
Arabidopsis thaliana
Arabidopsis thaliana
Presumptive Null
Molecular Type
Aberration Type
Molecular Details of the Mutation
18 SNPs and 9 indels observed in the promoter region and exon 1 and in particular an 11-bp deletion and 18-bp insertion near GTAC motifs which are normally binded by OsSPL16 repressor (reduced binding increasing transcription)
Experimental Evidence
Main Reference
Authors
Wang S; Li S; Liu Q; Wu K; Zhang J; Wang S; Wang Y; Chen X; et al.
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Abstract
The deployment of heterosis in the form of hybrid rice varieties has boosted grain yield, but grain quality improvement still remains a challenge. Here we show that a quantitative trait locus for rice grain quality, qGW7, reflects allelic variation of GW7, a gene encoding a TONNEAU1-recruiting motif protein with similarity to C-terminal motifs of the human centrosomal protein CAP350. Upregulation of GW7 expression was correlated with the production of more slender grains, as a result of increased cell division in the longitudinal direction and decreased cell division in the transverse direction. OsSPL16 (GW8), an SBP-domain transcription factor that regulates grain width, bound directly to the GW7 promoter and repressed its expression. The presence of a semidominant GW7(TFA) allele from tropical japonica rice was associated with higher grain quality without the yield penalty imposed by the Basmati gw8 allele. Manipulation of the OsSPL16-GW7 module thus represents a new strategy to simultaneously improve rice yield and grain quality.
Additional References
RELATED GEPHE
Related Genes
Related Haplotypes
No matches found.
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