GEPHE SUMMARY
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									Gephebase Gene
					
		
	
									Entry Status
					
		
													Published
					
	
									GepheID
					
		
													GP00001739
					
	
									Main curator
					
		
													Courtier
					
	
            		PHENOTYPIC CHANGE
            	            
	                
	
									Trait Category
					
		
	
									Trait State in Taxon A
					
		
													sensitive
					
	
									Trait State in Taxon B
					
		
													resistant
					
	
									Ancestral State
					
		
													Taxon A
					
	
									Taxonomic Status
					
		
	Taxon A #1
					
									Latin Name
					
		
	
									Common Name
					
		
																			lesser Egyptian jerboa
					
	
									Synonyms
					
		
																			lesser Egyptian jerboa
					
	
									Rank
					
		
																			species
					
	
		Lineage
	
	
															
				Show more ... 
						teleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Dipodinae; Jaculus
			
			
							Parent
					
		
	
							NCBI Taxonomy ID
					
		
	
									is Taxon A an Infraspecies?
					
		
																													No
					
	Taxon A #2
					
									Latin Name
					
		
	
									Common Name
					
		
																			old world ground squirrels
					
	
									Synonyms
					
		
																			old world ground squirrels; Spermophilus F. Cuvier, 1825
					
	
									Rank
					
		
																			genus
					
	
		Lineage
	
	
															
				Show more ... 
						stomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini
			
			
							Parent
					
		
	
							NCBI Taxonomy ID
					
		
	
									is Taxon A an Infraspecies?
					
		
																													No
					
	Taxon B #1
					
									Latin Name
					
		
	
									Common Name
					
		
																			Norway rat
					
	
									Synonyms
					
		
																			rat; rats; Norway rat; brown rat; Rattus norvegicus8; Rattus norwegicus
					
	
									Rank
					
		
																			species
					
	
		Lineage
	
	
															
				Show more ... 
						omi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
			
			
							Parent
					
		
	
							NCBI Taxonomy ID
					
		
	
									is Taxon B an Infraspecies?
					
		
																													No
					
	Taxon B #2
					
									Latin Name
					
		
	
									Common Name
					
		
																			house mouse
					
	
									Synonyms
					
		
																			house mouse; mouse; Mus musculus Linnaeus, 1758; mice C57BL/6xCBA/CaJ hybrid
					
	
									Rank
					
		
																			species
					
	
		Lineage
	
	
															
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						i; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
			
			
							Parent
					
		
	
							NCBI Taxonomy ID
					
		
	
									is Taxon B an Infraspecies?
					
		
																													No
					
	Taxon B #3
					
									Latin Name
					
		
	
									Common Name
					
		
																			golden hamster
					
	
									Synonyms
					
		
																			Golden hamsters; Syrian hamsters; golden hamster; Syrian golden hamster; Syrian golden hamsters; Syrian hamster; Mesocricetus auratus Waterhouse, 1839
					
	
									Rank
					
		
																			species
					
	
		Lineage
	
	
															
				Show more ... 
						stomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
			
			
							NCBI Taxonomy ID
					
		
	
									is Taxon B an Infraspecies?
					
		
																													No
					
	Taxon B #4
					
									Latin Name
					
		
	
									Common Name
					
		
																			North American deer mouse
					
	
									Synonyms
					
		
																			North American deer mouse; Peromyscus maniculatus (Wagner, 1845); MSB Mamm 74965; MSB:collector:Mamm:74965; Peromyscus maniculatis
					
	
									Rank
					
		
																			species
					
	
		Lineage
	
	
															
				Show more ... 
						eostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
			
			
							NCBI Taxonomy ID
					
		
	
									is Taxon B an Infraspecies?
					
		
																													No
					
	Taxon B #5
					
									Latin Name
					
		
	
									Common Name
					
		
																			Upper Galilee mountains blind mole rat
					
	
									Synonyms
					
		
																			Nannospalax ehrenbergi galili; Spalax galili; Upper Galilee mountains blind mole rat; Spalax galili Nevo, Ivanitskaya & Beiles 2001
					
	
									Rank
					
		
																			species
					
	
		Lineage
	
	
															
				Show more ... 
						ostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
			
			
							NCBI Taxonomy ID
					
		
	
									is Taxon B an Infraspecies?
					
		
																													No
					
	
            GENOTYPIC CHANGE
            	            
	                
	
									Generic Gene Name
					
		
																			Atp1a1
					
	
									Synonyms
					
		
																			Atpa-1; BC010319
					
	
									String
					
		
	
									Sequence Similarities
					
		
																			Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIC subfamily.
					
	
							GO - Molecular Function
						
						
																														GO:0005524 : ATP binding
							
									 ... show more
										
																					
					
							GO - Biological Process
						
						
					
							GO - Cellular Component
						
						
																														GO:0016021 : integral component of membrane
							
									 ... show more
										
																					
					
									UniProtKB
																							
Mus musculus
						
					Mus musculus
		Mutation #1
	
					
									Presumptive Null
					
		
	
									Molecular Type
					
		
	
									Aberration Type
					
		
	
									SNP Coding Change
					
		
													Nonsynonymous
					
	
									Molecular Details of the Mutation
					
		
													Q111R
					
	
									Experimental Evidence
					
		
	| Taxon A | Taxon B | Position | |
|---|---|---|---|
| Codon | - | - | - | 
| Amino-acid | Gln | Arg | 111 | 
				Main Reference
	
	
				Authors
	
	
									Shull GE; Greeb J; Lingrel JB
										
							Abstract
					
		
																			Rat brain and kidney cDNA libraries were constructed and screened with a cDNA insert corresponding to the mRNA for the sheep kidney Na+,K+-ATPase catalytic subunit. The alpha-subunit cDNAs isolated from the kidney library were derived from a single class of messenger RNA, and the brain cDNAs were derived from three classes of messenger RNA. The most abundant brain cDNA, which spans 5.1 kilobases, encodes the alpha(+) form of the enzyme. The second most abundant brain cDNA, which spans 3.65 kilobases, is identical with that of the kidney form and therefore encodes the alpha isoform. The third class of cDNA, which spans 3.55 kilobases, was present at low abundance and encodes an isoform of the alpha-subunit, designated alpha III, which has not been identified previously. The complete nucleotide sequence and deduced amino acid sequence for each of the brain and kidney cDNAs have been determined. In addition, we have identified a lysine-rich sequence that may function as a movable, ion-selective gate during cation binding and occlusion and have also identified several amino acid sequence variations that appear to explain some of the well-known species and tissue differences in cardiac glycoside sensitivity.
					
	
				Additional References
	
	
		Mutation #2
	
					
									Presumptive Null
					
		
	
									Molecular Type
					
		
	
									Aberration Type
					
		
	
									SNP Coding Change
					
		
													Nonsynonymous
					
	
									Molecular Details of the Mutation
					
		
													N122D
					
	
									Experimental Evidence
					
		
	| Taxon A | Taxon B | Position | |
|---|---|---|---|
| Codon | - | - | - | 
| Amino-acid | Asn | Asp | 122 | 
				Main Reference
	
	
				Authors
	
	
									Shull GE; Greeb J; Lingrel JB
										
							Abstract
					
		
																			Rat brain and kidney cDNA libraries were constructed and screened with a cDNA insert corresponding to the mRNA for the sheep kidney Na+,K+-ATPase catalytic subunit. The alpha-subunit cDNAs isolated from the kidney library were derived from a single class of messenger RNA, and the brain cDNAs were derived from three classes of messenger RNA. The most abundant brain cDNA, which spans 5.1 kilobases, encodes the alpha(+) form of the enzyme. The second most abundant brain cDNA, which spans 3.65 kilobases, is identical with that of the kidney form and therefore encodes the alpha isoform. The third class of cDNA, which spans 3.55 kilobases, was present at low abundance and encodes an isoform of the alpha-subunit, designated alpha III, which has not been identified previously. The complete nucleotide sequence and deduced amino acid sequence for each of the brain and kidney cDNAs have been determined. In addition, we have identified a lysine-rich sequence that may function as a movable, ion-selective gate during cation binding and occlusion and have also identified several amino acid sequence variations that appear to explain some of the well-known species and tissue differences in cardiac glycoside sensitivity.
					
	
				Additional References
	
	
            RELATED GEPHE
        
	
					   		Related Genes
					
					
													No matches found.
											
				
								Related Haplotypes
					
					
													No matches found.
											
				
            EXTERNAL LINKS
        
    
            COMMENTS
        
	
					@SeveralMutationsWithEffect - Evolution occurred at the basis of the rodent tree (see figure S4 of Ujvari et al. 2015)
				
			
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