GEPHE SUMMARY Print
Gephebase Gene
BADH2
Entry Status
Published
GepheID
GP00001772
Main curator
Courtier
PHENOTYPIC CHANGE
Trait Category
Physiology
Trait
Fragrance
Trait State in Taxon A
Oryza sativa - non-fragrant
Trait State in Taxon B
Oryza sativa fragrant - varieties Suyunuo, Wuxiangjing, Pangxiegu, Xiangxuenuo, XiangjingT37, Wuxiang075, Xiangjing20–18, Basmati385, Basmati370, Ganxiangnuo, Meiguomolixiang, Guanglingxiangnuo
Ancestral State
Taxon A
Taxonomic Status
Domesticated
Taxon A
Latin Name
Oryza sativa
Common Name
rice
Synonyms
rice; red rice; Oryza sativa L.
Rank
species
Lineage
Show more ... ytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Parent
Oryza () - (Rank: genus)
NCBI Taxonomy ID
4530
is Taxon A an Infraspecies?
No
Taxon B
Latin Name
Oryza sativa
Common Name
rice
Synonyms
rice; red rice; Oryza sativa L.
Rank
species
Lineage
Show more ... ytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Parent
Oryza () - (Rank: genus)
NCBI Taxonomy ID
4530
is Taxon B an Infraspecies?
Yes
Taxon B Description
Suyunuo, Wuxiangjing, Pangxiegu, Xiangxuenuo, XiangjingT37, Wuxiang075, Xiangjing20–18, Basmati385, Basmati370, Ganxiangnuo, Meiguomolixiang, Guanglingxiangnuo
GENOTYPIC CHANGE
Generic Gene Name
BADH2
Synonyms
fgr; BADH2; OsBADH2; OsJ_27367; LOC_Os08g32870; Os08g0424500; OSJNBa0056L09.30; P0456B03.101
String
39947.LOC_Os08g32870.1
Sequence Similarities
Belongs to the aldehyde dehydrogenase family.
GO - Molecular Function
GO:0008802 : betaine-aldehyde dehydrogenase activity
GO - Biological Process
GO:0071454 : cellular response to anoxia ... show more
GO - Cellular Component
GO:0005737 : cytoplasm ... show more
UniProtKB
Oryza sativa subsp. japonica
Q84LK3
GenebankID or UniProtKB
ALZ42021
Presumptive Null
Yes
Molecular Type
Coding
Aberration Type
Deletion
Deletion Size
1-9 bp
Molecular Details of the Mutation
7-bp deletion in exon 2 resulting in premature stop codon
Experimental Evidence
Candidate Gene
Main Reference
Discovery of a new fragrance allele and the development of functional markers for the breeding of fragrant rice varieties . (2008 )
Authors
Shi Weiwei; Yang Yi; Chen Saihua; Xu Mingliang
Abstract
-
Additional References
The origin and evolution of fragrance in rice (Oryza sativa L.). (2009)
RELATED GEPHE
Related Genes
No matches found.
Related Haplotypes
9
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