GEPHE SUMMARY Print
Gephebase Gene
EPSPS
Entry Status
Published
GepheID
GP00001892
Main curator
Courtier
PHENOTYPIC CHANGE
Trait Category
Physiology
Trait
Xenobiotic resistance (herbicides; glyphosate)
Trait State in Taxon A
Amaranthus tuberculatus - sensitive
Trait State in Taxon B
Amaranthus tuberculatus - resistant
Ancestral State
Taxon A
Taxonomic Status
Intraspecific
Taxon A
Latin Name
Amaranthus tuberculatus
Common Name
-
Synonyms
Amaranthus rudis; Amaranthus rudis J.D.Sauer; Amaranthus tuberculatus (Moq.) J.D.Sauer
Rank
species
Lineage
Show more ... reptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Parent
Amaranthus () - (Rank: genus)
NCBI Taxonomy ID
277990
is Taxon A an Infraspecies?
No
Taxon B
Latin Name
Amaranthus tuberculatus
Common Name
-
Synonyms
Amaranthus rudis; Amaranthus rudis J.D.Sauer; Amaranthus tuberculatus (Moq.) J.D.Sauer
Rank
species
Lineage
Show more ... reptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Parent
Amaranthus () - (Rank: genus)
NCBI Taxonomy ID
277990
is Taxon B an Infraspecies?
Yes
Taxon B Description
Brown County glyphosate-resistant
GENOTYPIC CHANGE
Generic Gene Name
At2g45300
Synonyms
F4L23.19; At2g45300
String
3702.AT2G45300.1
Sequence Similarities
Belongs to the EPSP synthase family.
GO - Molecular Function
GO:0003866 : 3-phosphoshikimate 1-carboxyvinyltransferase activity
GO - Biological Process
GO:0009073 : aromatic amino acid family biosynthetic process ... show more
GO - Cellular Component
GO:0009507 : chloroplast ... show more
UniProtKB
Arabidopsis thaliana
P05466
GenebankID or UniProtKB
Presumptive Null
No
Molecular Type
Coding
Aberration Type
SNP
SNP Coding Change
Nonsynonymous
Molecular Details of the Mutation
resistance not due to EPSPS amplification; partly due to P106S mutation
Experimental Evidence
Candidate Gene
Taxon A Taxon B Position
Codon - - -
Amino-acid Pro Ser 106
Main Reference
Multiple resistance to herbicides from four site-of-action groups in waterhemp (Amaranthus tuberculatus) . (2013 )
Authors
Bell Michael S; Hager Aaron G; Tranel Patrick J
Abstract
-
Additional References
RELATED GEPHE
Related Genes
2 (ALS, protoporphyrinogen oxidase (PPO2 = PPX2L))
Related Haplotypes
1
EXTERNAL LINKS
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