GEPHE SUMMARY Print
Gephebase Gene
Entry Status
Published
GepheID
GP00001906
Main curator
Courtier
PHENOTYPIC CHANGE
Trait Category
Trait State in Taxon A
domesticated tomato
Trait State in Taxon B
atroviolacium locus - enhances anthocyanin accumulation when introgressed into domesticated tomato
Ancestral State
Taxon A
Taxonomic Status
Taxon A
Common Name
tomato
Synonyms
Lycopersicon esculentum var. esculentum; Solanum esculentum; Solanum lycopersicum var. humboldtii; tomato; Lycopersicon esculentum Mill.; Solanum esculentum Dunal; Solanum lycopersicum L.; Lycopersicon lycopersicum; Lycopersicum esculentum; Solanum lycopersicon
Rank
species
Lineage
Show more ... heophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
NCBI Taxonomy ID
is Taxon A an Infraspecies?
No
Taxon B
Common Name
-
Synonyms
Lycopersicon cheesmaniae; Lycopersicon cheesmanii; non Solanum cheesmanii Geras.; Lycopersicon cheesmaniae L.Riley; Solanum cheesmaniae (L.Riley) Fosberg
Rank
species
Lineage
Show more ... heophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
NCBI Taxonomy ID
is Taxon B an Infraspecies?
No
GENOTYPIC CHANGE
Presumptive Null
Yes
Molecular Type
Aberration Type
Insertion Size
1-9 bp
Molecular Details of the Mutation
SlMYBATV encodes a R3 MYB transcription factor. 4-bp insertion predicted to result in a frame-shift that would alter the protein sequence from amino-acid position 20 onwards by inducing premature termination of translation including the R3/bHLH-binding domain
Experimental Evidence
Authors
Cao X; Qiu Z; Wang X; Van Giang T; Liu X; Wang J; Wang X; Gao J; et al. ... show more
Abstract
Anthocyanins are potential health-promoting compounds in the human diet. The atv (atroviolacium) locus, derived from the wild tomato species Solanum cheesmaniae, has been shown to enhance anthocyanin pigmentation in tomato fruit when it co-exists with either the Aft (Anthocyanin fruit) or the Abg (Aubergine) locus. In the present study, the atv locus was fine-mapped to an approximately 5.0-kb interval on chromosome 7. A putative R3 MYB repressor was identified in this interval and is hereby designated as SlMYBATV. The allele of SlMYBATV underlying the atv locus harbored a 4-bp insertion in its coding region, which is predicted to result in a frame-shift and premature protein truncation. The other candidate R3 MYB and R2R3 MYB repressors of anthocyanin biosynthesis were also identified in tomato via a genome-wide search. Transcriptional analysis showed that most of the structural genes and several regulatory genes of anthocyanin biosynthesis were up-regulated in the tomato SlMYBATV mutant lines. These findings may facilitate the elucidation of the molecular mechanisms underlying anthocyanin pigmentation in tomato fruit and help in the marker-assisted selection of anthocyanin-enriched tomato cultivars.

© The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology.
Additional References
RELATED GEPHE
Related Genes
No matches found.
Related Haplotypes
No matches found.
EXTERNAL LINKS
COMMENTS
This mutation comes from the wild relative of tomato: S. cheesmaniae. The locus was introduced into varieties of domesticated tomatoes such as the variety Indigo Rose. QTL mapping between Indigo Rose and Heinz1706 (considered as wild-type).
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