GEPHE SUMMARY
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									Gephebase Gene
					
		
	
									Entry Status
					
		
													Published
					
	
									GepheID
					
		
													GP00002084
					
	
									Main curator
					
		
																				-
					
	
            		PHENOTYPIC CHANGE
            	            
	                
	
									Trait Category
					
		
	
									Trait
					
		
	
									Trait State in Taxon A
					
		
													lower drought tolerance
					
	
									Trait State in Taxon B
					
		
													higher drought tolerance
					
	
									Ancestral State
					
		
													Taxon A
					
	
									Taxonomic Status
					
		
	Taxon A
					
									Latin Name
					
		
	
									Common Name
					
		
																				-
					
	
									Synonyms
					
		
																			Zea mays var. japonica; maize; Zea mays L.; Zea mays mays
					
	
									Rank
					
		
																			species
					
	
		Lineage
	
	
															
				Show more ... 
						phyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
			
			
							Parent
					
		
	
							NCBI Taxonomy ID
					
		
	
									is Taxon A an Infraspecies?
					
		
																													No
					
	Taxon B
					
									Latin Name
					
		
	
									Common Name
					
		
																				-
					
	
									Synonyms
					
		
																			Zea mays var. japonica; maize; Zea mays L.; Zea mays mays
					
	
									Rank
					
		
																			species
					
	
		Lineage
	
	
															
				Show more ... 
						phyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
			
			
							Parent
					
		
	
							NCBI Taxonomy ID
					
		
	
									is Taxon B an Infraspecies?
					
		
																													No
					
	
            GENOTYPIC CHANGE
            	            
	                
	
									Generic Gene Name
					
		
																				-
					
	
									Synonyms
					
		
																				-
					
	
									String
					
		
																				-
					
	
									Sequence Similarities
					
		
																				-
					
	
							GO - Molecular Function
						
						
																											-
	
																					
					
							GO - Biological Process
						
						
																											-
	
																					
					
							GO - Cellular Component
						
						
																											-
	
																					
					
									Presumptive Null
					
		
	
									Molecular Type
					
		
	
									Aberration Type
					
		
	
									Insertion Size
					
		
													1-10 kb
					
	
									Molecular Details of the Mutation
					
		
													MITE insertion within the ZmCCT promoter which results in histone hypermethylation and represses the expression of NAC; resulting in a higher drought tolerance.
					
	
									Experimental Evidence
					
		
	
				Authors
	
	
									Yang Q; Li Z; Li W; Ku L; Wang C; Ye J; Li K; Yang N; et al.
									
					... show more
										
							Abstract
					
		
																			The postdomestication adaptation of maize to longer days required reduced photoperiod sensitivity to optimize flowering time. We performed a genome-wide association study and confirmed that ZmCCT, encoding a CCT domain-containing protein, is associated with the photoperiod response. In early-flowering maize we detected a CACTA-like transposable element (TE) within the ZmCCT promoter that dramatically reduced flowering time. TE insertion likely occurred after domestication and was selected as maize adapted to temperate zones. This process resulted in a strong selective sweep within the TE-related block of linkage disequilibrium. Functional validations indicated that the TE represses ZmCCT expression to reduce photoperiod sensitivity, thus accelerating maize spread to long-day environments. 
					
	
				Additional References
	
	
            RELATED GEPHE
        
	
					   		Related Genes
					
					
				
								Related Haplotypes
					
					
													No matches found.
											
				
            EXTERNAL LINKS
        
    
            COMMENTS
        
	
					@TE - Postdomestication adaptation of maize to longer days (reduced photoperiod sensitivity to optimize flowering time). The TE insertion likely occurred after domestication and was selected as maize adapted to temperate zones. This process resulted in a strong @SelectiveSweep within the TE-related block of linkage disequilibrium.
				
			
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