GEPHE SUMMARY Print
Gephebase Gene
Entry Status
Published
GepheID
GP00002084
Main curator
-
PHENOTYPIC CHANGE
Trait Category
Trait State in Taxon A
lower drought tolerance
Trait State in Taxon B
higher drought tolerance
Ancestral State
Taxon A
Taxonomic Status
Taxon A
Latin Name
Common Name
-
Synonyms
Zea mays var. japonica; maize; Zea mays L.; Zea mays mays
Rank
species
Lineage
Show more ... phyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
NCBI Taxonomy ID
is Taxon A an Infraspecies?
No
Taxon B
Latin Name
Common Name
-
Synonyms
Zea mays var. japonica; maize; Zea mays L.; Zea mays mays
Rank
species
Lineage
Show more ... phyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
NCBI Taxonomy ID
is Taxon B an Infraspecies?
No
GENOTYPIC CHANGE
Generic Gene Name
-
Synonyms
-
String
-
Sequence Similarities
-
GO - Molecular Function
-
GO - Biological Process
-
GO - Cellular Component
-
UniProtKB
GenebankID or UniProtKB
Presumptive Null
Yes
Molecular Type
Aberration Type
Insertion Size
1-10 kb
Molecular Details of the Mutation
MITE insertion within the ZmCCT promoter which results in histone hypermethylation and represses the expression of NAC; resulting in a higher drought tolerance.
Experimental Evidence
Authors
Yang Q; Li Z; Li W; Ku L; Wang C; Ye J; Li K; Yang N; et al. ... show more
Abstract
The postdomestication adaptation of maize to longer days required reduced photoperiod sensitivity to optimize flowering time. We performed a genome-wide association study and confirmed that ZmCCT, encoding a CCT domain-containing protein, is associated with the photoperiod response. In early-flowering maize we detected a CACTA-like transposable element (TE) within the ZmCCT promoter that dramatically reduced flowering time. TE insertion likely occurred after domestication and was selected as maize adapted to temperate zones. This process resulted in a strong selective sweep within the TE-related block of linkage disequilibrium. Functional validations indicated that the TE represses ZmCCT expression to reduce photoperiod sensitivity, thus accelerating maize spread to long-day environments.
Additional References
RELATED GEPHE
Related Genes
Related Haplotypes
No matches found.
EXTERNAL LINKS
COMMENTS
@TE - Postdomestication adaptation of maize to longer days (reduced photoperiod sensitivity to optimize flowering time). The TE insertion likely occurred after domestication and was selected as maize adapted to temperate zones. This process resulted in a strong @SelectiveSweep within the TE-related block of linkage disequilibrium.
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