GEPHE SUMMARY
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									Gephebase Gene
					
		
	
									Entry Status
					
		
													Published
					
	
									GepheID
					
		
													GP00002496
					
	
									Main curator
					
		
													Courtier
					
	
            		PHENOTYPIC CHANGE
            	            
	                
	
									Trait Category
					
		
	
									Trait State in Taxon A
					
		
													Thrips tabaci
					
	
									Trait State in Taxon B
					
		
													Thrips tabaci - resistant
					
	
									Ancestral State
					
		
													Taxon A
					
	
									Taxonomic Status
					
		
	Taxon A
					
									Latin Name
					
		
	
									Common Name
					
		
																				-
					
	
									Synonyms
					
		
																			Thrips tabaci Lindeman, 1889
					
	
									Rank
					
		
																			species
					
	
		Lineage
	
	
															
				Show more ... 
						; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Thripinae; Thrips
			
			
							Parent
					
		
	
							NCBI Taxonomy ID
					
		
	
									is Taxon A an Infraspecies?
					
		
																													No
					
	Taxon B
					
									Latin Name
					
		
	
									Common Name
					
		
																				-
					
	
									Synonyms
					
		
																			Thrips tabaci Lindeman, 1889
					
	
									Rank
					
		
																			species
					
	
		Lineage
	
	
															
				Show more ... 
						; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Thripinae; Thrips
			
			
							Parent
					
		
	
							NCBI Taxonomy ID
					
		
	
									is Taxon B an Infraspecies?
					
		
																													No
					
	
            GENOTYPIC CHANGE
            	            
	                
	
									Generic Gene Name
					
		
																			para
					
	
									Synonyms
					
		
																			bas; bss; CG9907; Dmel\CG9907; DmNav; DmNav1; DmNa[[v]]; DmNa[[V]]; DmNa[[v]]1; l(1)14Da; l(1)ESHS48; lincRNA.S9469; Nav1; Ocd; olfD; par; sbl; sbl-1; Shu; Shudderer
					
	
									String
					
		
	
									Sequence Similarities
					
		
																			Belongs to the sodium channel (TC 1.A.1.10) family. Para subfamily.
					
	
							GO - Molecular Function
						
						
																														GO:0005509 : calcium ion binding
							
									 ... show more
										
																					
					
							GO - Biological Process
						
						
					
							GO - Cellular Component
						
						
																														GO:0005887 : integral component of plasma membrane
							
									 ... show more
										
																					
					
									UniProtKB
																							
Drosophila melanogaster
						
					Drosophila melanogaster
		Mutation #1
	
					
									Presumptive Null
					
		
	
									Molecular Type
					
		
	
									Aberration Type
					
		
	
									SNP Coding Change
					
		
													Nonsynonymous
					
	
									Molecular Details of the Mutation
					
		
													M918T+L1014F
					
	
									Experimental Evidence
					
		
	| Taxon A | Taxon B | Position | |
|---|---|---|---|
| Codon | - | - | - | 
| Amino-acid | Met | Thr | 918 | 
				Authors
	
	
									Toda S; Morishita M
										
							Abstract
					
		
																			In the onion thrips, Thrips tabaci Lindeman (Thysanoptera: Thripidae), the development of resistance to pyrethroid insecticides has become a problem worldwide. To identify this species' resistance mechanism, we analyzed partial nucleotides and deduced the amino acid sequences of the para-orthologous sodium channel gene by using 10 Japanese strains of T. tabaci that have a variety of susceptibility levels to pyrethroids. Six nucleotide substitutions were found in their cDNA sequences. Three of these create amino acid substitutions, M918T, T929I, and L1014F, which are well known to be associated with knockdown resistance in some pest insects. In the five highly resistant strains, two mutations, M918T and L1014F, were always detected with wild-type sequences, suggesting that these strains have both mutations heterozygously. A moderately resistant strain was homozygous for the T929I mutation. This is the first report to identify these three major mutations within the same species.
					
	
				Additional References
	
	
		Mutation #2
	
					
									Presumptive Null
					
		
	
									Molecular Type
					
		
	
									Aberration Type
					
		
	
									SNP Coding Change
					
		
													Nonsynonymous
					
	
									Molecular Details of the Mutation
					
		
													M918T+L1014F
					
	
									Experimental Evidence
					
		
	| Taxon A | Taxon B | Position | |
|---|---|---|---|
| Codon | - | - | - | 
| Amino-acid | Leu | Phe | 1014 | 
				Authors
	
	
									Toda S; Morishita M
										
							Abstract
					
		
																			In the onion thrips, Thrips tabaci Lindeman (Thysanoptera: Thripidae), the development of resistance to pyrethroid insecticides has become a problem worldwide. To identify this species' resistance mechanism, we analyzed partial nucleotides and deduced the amino acid sequences of the para-orthologous sodium channel gene by using 10 Japanese strains of T. tabaci that have a variety of susceptibility levels to pyrethroids. Six nucleotide substitutions were found in their cDNA sequences. Three of these create amino acid substitutions, M918T, T929I, and L1014F, which are well known to be associated with knockdown resistance in some pest insects. In the five highly resistant strains, two mutations, M918T and L1014F, were always detected with wild-type sequences, suggesting that these strains have both mutations heterozygously. A moderately resistant strain was homozygous for the T929I mutation. This is the first report to identify these three major mutations within the same species.
					
	
				Additional References
	
	
            RELATED GEPHE
        
	
					   		Related Genes
					
					
													No matches found.
											
				
								Related Haplotypes
					
					
				
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