GEPHE SUMMARY Print
Gephebase Gene
Entry Status
Published
GepheID
GP00000983
Main curator
Martin
PHENOTYPIC CHANGE
Trait Category
Trait State in Taxon A
Brassica rapa - sensitive to Turnip Mosaic Virus
Trait State in Taxon B
Brassica rapa - resistant to Turnip Mosaic Virus (monogenic; recessive)
Ancestral State
Taxon A
Taxonomic Status
Taxon A
Latin Name
Common Name
field mustard
Synonyms
field mustard; Brassica rapa L.; Brassica rapa L., 1753
Rank
species
Lineage
Show more ... ina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
NCBI Taxonomy ID
is Taxon A an Infraspecies?
Yes
Taxon A Description
Brassica rapa - Ji Zao Chun
Taxon B
Latin Name
Common Name
field mustard
Synonyms
field mustard; Brassica rapa L.; Brassica rapa L., 1753
Rank
species
Lineage
Show more ... ina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
NCBI Taxonomy ID
is Taxon B an Infraspecies?
Yes
Taxon B Description
Brassica rapa - BP8407
GENOTYPIC CHANGE
Generic Gene Name
EIF(ISO)4E
Synonyms
EIF(ISO)4E; EIF4E2; eIFiso4E; EUKARYOTIC INITIATION FACTOR (ISO)4E; EUKARYOTIC INITIATION FACTOR (ISO)4E; EUKARYOTIC TRANSLATION INITATION FACTOR 4E2; eukaryotic translation Initiation Factor isoform 4E; LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1; LSP; MJE4.8; MJE4_8; LSP1; At5g35620
Sequence Similarities
Belongs to the eukaryotic initiation factor 4E family.
UniProtKB
Arabidopsis thaliana
GenebankID or UniProtKB
Presumptive Null
No
Molecular Type
Aberration Type
SNP
SNP Coding Change
Nonsynonymous
Molecular Details of the Mutation
G152R
Experimental Evidence
Taxon A Taxon B Position
Codon - - -
Amino-acid - - -
Authors
Qian W; Zhang S; Zhang S; Li F; Zhang H; Wu J; Wang X; Walsh JA; et al. ... show more
Abstract
The extreme resistance to Turnip mosaic virus observed in the Chinese cabbage (Brassica rapa) line, BP8407, is monogenic and recessive. Bulked segregant analysis was carried out to identify simple sequence repeat and Indel markers linked to this recessive resistance gene, termed recessive Turnip mosaic virus resistance 02 (retr02). Mapping of PCR-specific Indel markers on 239 individuals of a BP8407 × Ji Zao Chun F(2) population, located this resistance gene to a 0.9-cM interval between two Indel markers (BrID10694 and BrID101309) and in scaffold000060 or scaffold000104 on chromosome A04 of the B. rapa genome. Eleven eukaryotic initiation factor 4E (eIF4E) and 14 eukaryotic initiation factor 4G (eIF4G) genes are predicted in the B. rapa genome. A candidate gene, Bra035393 on scaffold000104, was predicted within the mapped resistance locus. The gene encodes the eIF(iso)4E protein. Bra035393 was sequenced in BP8407 and Ji Zao Chun. A polymorphism (A/G) was found in exon 3 between BP8407 and Ji Zao Chun. This gene was analysed in four resistant and three susceptible lines. A correlation was observed between the amino acid substitution (Gly/Asp) in the eIF(iso)4E protein and resistance/susceptibility. eIF(iso)4E has been shown previously to interact with the TuMV genome-linked protein, VPg.
Additional References
RELATED GEPHE
Related Genes
No matches found.
Related Haplotypes
No matches found.
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