Gephebase

Gephebase Search Results

This Summary Table shows only the major fields for each entry. If you are interested in other fields (gene synonyms, GO terms, molecular details of the mutation, comments, etc.), please export the .csv file, which contains the complete data for each entry. Please click on a GepheID if you want to see all information regarding a particular entry.

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Your research retrieved 9 results.

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Gene	Trait	Mutation	Taxon B	Taxonomic Status	Evidence	Main Reference	Gephe ID	UniProtKB	Trait Category	Mutation Details	Taxon A	Taxon B	Edit Gene-GePhe	Taxon B	Status
FLO1	Cell separation	Other, Unknown	Saccharomyces cerevisiae baker's yeast - (species)	Domesticated	Candidate Gene	Smukalla S; Caldara M; Pochet N ; et al. (2008) FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast. 1 Additional References Verstrepen KJ; Jansen A; Lewitter F (2005) Intragenic tandem repeats generate functional variability.	GP00000342	FLO1 P32768	Physiology	both coding and non-coding divergence ; polyQ variation	Saccharomyces cerevisiae baker's yeast - (species)	Saccharomyces cerevisiae baker's yeast - (species)	FLO1	Saccharomyces cerevisiae baker's yeast - (species)	Published - Accepted by Curator
Kit (type III receptor protein-tyrosine kinase)	Coloration (coat)	Other, SNP	Vulpes lagopus Arctic fox - (species) D	Domesticated	Candidate Gene	Yan SQ; Hou JN; Bai CY ; et al. (2014) A base substitution in the donor site of intron 12 of KIT gene is responsible for the dominant white[...]	GP00002192	Kit P05532	Morphology	dominant white coat colour of blue fox results from an exon 12 skipping caused by a c.1867+1G>T substitution in the first nucleotide of intron 12 of the KIT gene	Vulpes lagopus Arctic fox - (species)	Vulpes lagopus Arctic fox - (species) D	Kit (type III receptor protein-tyrosine kinase)	Vulpes lagopus Arctic fox - (species)	Published - Accepted by Curator
LOC105383139	Courtship behavior	Other, Insertion	Lepidoptera butterflies and moths - (order) D	Intergeneric or Higher	Association Mapping	Li Y; Liu Z; Liu C ; et al. (2022) HGT is widespread in insects and contributes to male courtship in lepidopterans.	GP00002412		Behavior	Horizontal Gene Transfer from Listeria bacteria to Lepidoptera of an entire gene coding region. The gene contains an alcohol dehydrogenase domain and a zinc-binding dehydrogenase domain.	Trichoptera caddisflies - (order)	Lepidoptera butterflies and moths - (order) D	LOC105383139	Lepidoptera butterflies and moths - (order)	Published - Accepted by Curator
MEP2	Salt tolerance (experimental evolution; low ammonium)	Other, Complex Change	Saccharomyces uvarum (species)	Experimental Evolution	Association Mapping	Dunn B; Paulish T; Stanbery A ; et al. (2013) Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model [...]	GP00000651	MEP2 P41948	Physiology	Chimeric gene in diploid hybrids formed by recombination between the parental alleles	Saccharomyces cerevisiae baker's yeast - (species)	Saccharomyces uvarum (species)	MEP2	Saccharomyces uvarum (species)	Published - Accepted by Curator
Prolactin receptor	Feather (slow-feathering ; delay)	Other, Insertion	Gallus gallus chicken - (species) D	Domesticated	Linkage Mapping	Elferink MG; Vallée AA; Jungerius AP ; et al. (2008) Partial duplication of the PRLR and SPEF2 genes at the late feathering locus in chicken. 1 Additional References Takenouchi A; Toshishige M; Ito N (2018) Endogenous viral gene ev21 is not responsible for the expression of late feathering in chickens.	GP00002280	PRLR P16471	Morphology	tandem duplication of 176324 basepairs resulting in a partially duplicated PRLR (dPRLR) gene nearly identical to the original PRLR ; except for its lack of a 149-amino acid C-terminal tail - which may titrate PRL ligands and act as a dominant-negative receptor	Gallus gallus chicken - (species)	Gallus gallus chicken - (species) D	Prolactin receptor	Gallus gallus chicken - (species)	Published - Accepted by Curator
S locus supergene (GLO/CFB Cluster)	Flower morphology (heterostyly)	Other, Complex Change	Primula vulgaris (species)	Intraspecific	Linkage Mapping	Li J; Cocker JM; Wright J ; et al. (2016) Genetic architecture and evolution of the S locus supergene in Primula vulgaris.	GP00001392		Morphology	Absence/presence of a supergene constituted by a cluster of 6 genes	Primula vulgaris (species)	Primula vulgaris (species)	S locus supergene (GLO/CFB Cluster)	Primula vulgaris (species)	Published - Accepted by Curator
TRIM5alpha-CypA chimeric gene	Pathogen resistance (retroviruses)	Other, Insertion	Aotus night monkeys - (genus)	Intergeneric or Higher	Candidate Gene	Sayah DM; Sokolskaja E; Berthoux L ; et al. (2004) Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1. 1 Additional References Nisole S; Lynch C; Stoye JP (2004) A Trim5-cyclophilin A fusion protein found in owl monkey kidney cells can restrict HIV-1.	GP00001136	TRIM5 Q9C035	Physiology	LINE-mediated retrotransposition of the CyclophilinA gene between exons 7 and 8 of TRIM5alpha	Platyrrhini New World monkeys - (parvorder)	Aotus night monkeys - (genus)	TRIM5alpha-CypA chimeric gene	Aotus night monkeys - (genus)	Published - Accepted by Curator
TRIM5alpha-CypA chimeric gene	Pathogen resistance (retroviruses)	Other, Insertion	Macaca macaques - (genus)	Intergeneric or Higher	Candidate Gene	Stoye JP; Yap MW (2008) Chance favors a prepared genome.	GP00001137	TRIM5 Q9C035	Physiology	LINE-mediated retrotransposition of the CyclophilinA gene into 3'UTR (exon 8) of TRIM5alpha	Cercopithecidae Old World monkeys - (family)	Macaca macaques - (genus)	TRIM5alpha-CypA chimeric gene	Macaca macaques - (genus)	Published - Accepted by Curator
VvMYBA1	Coloration (fruit)	Other, Deletion	Vitis vinifera wine grape - (species) D	Domesticated	Candidate Gene	Azuma A; Kobayashi S; Goto-Yamamoto N ; et al. (2009) Color recovery in berries of grape (Vitis vinifera L.) 'Benitaka', a bud sport of 'Italia', is cause[...]	GP00002099	VvmybA1 Q6L973	Morphology	homologous recombination between the non-functional allele of MybA1 and the truncated MybA3 gene at their promoter region, resulting in the recovery of MybA1 genomic integrity (and therefore its transcription) on cv. ‘Benitaka’. The VvmybA1 locus of 'Benitaka' is heterozygous for the VvmybA1a allele (non-functional) and a novel VvmybA1(BEN) allele. VvmybA1(BEN) restores VvmybA1 transcripts.	Vitis vinifera wine grape - (species)	Vitis vinifera wine grape - (species) D	VvMYBA1	Vitis vinifera wine grape - (species)	Published - Accepted by Curator