Gephebase

Gephebase Search Results

This Summary Table shows only the major fields for each entry. If you are interested in other fields (gene synonyms, GO terms, molecular details of the mutation, comments, etc.), please export the .csv file, which contains the complete data for each entry. Please click on a GepheID if you want to see all information regarding a particular entry.

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Your research retrieved 12 results.

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Gene	Trait	Mutation	Taxon B	Taxonomic Status	Evidence	Main Reference	Gephe ID	UniProtKB	Trait Category	Mutation Details	Taxon A	Taxon B	Edit Gene-GePhe	Taxon B	Status
ABCB1	Plant size (dwarfism)	Coding, Insertion N	Sorghum bicolor sorghum - (species)	Domesticated	Candidate Gene	Multani DS; Briggs SP; Chamberlin MA ; et al. (2003) Loss of an MDR transporter in compact stalks of maize br2 and sorghum dw3 mutants.	GP00000007	ABCB1 Q9ZR72	Morphology	882bp direct duplication in exon 5 of the dw3 allele driving loss-of-function N	Sorghum bicolor sorghum - (species)	Sorghum bicolor sorghum - (species)	ABCB1	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator
ds1	Pathogen resistance	Unknown, Unknown	Sorghum bicolor sorghum - (species)	Domesticated	Linkage Mapping	Kawahigashi H; Kasuga S; Ando T ; et al. (2011) Positional cloning of ds1, the target leaf spot resistance gene against Bipolaris sorghicola in sorg[...]	GP00000238	ds1 K0IXC4	Physiology	unknown	Sorghum bicolor sorghum - (species)	Sorghum bicolor sorghum - (species)	ds1	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator
Heading Date 1 (HD1)	Flowering time	Coding, Deletion N	Sorghum virgatum (species) D	Domesticated	Association Mapping	Liu H; Liu H; Zhou L ; et al. (2015) Parallel Domestication of the Heading Date 1 Gene in Cereals.	GP00001408	CO Q39057	Physiology	5bp deletion in the coding sequence leading to gene frameshift N	Sorghum bicolor sorghum - (species)	Sorghum virgatum (species) D	Heading Date 1 (HD1)	Sorghum virgatum (species)	Published - Accepted by Curator
MATE1/AltSB/SbMATE	Metal tolerance	Cis-regulatory, Unknown	Sorghum bicolor sorghum - (species)	Domesticated	Linkage Mapping	Magalhaes JV; Liu J; Guimarães CT ; et al. (2007) A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sor[...]	GP00000565		Physiology	unknown	Sorghum bicolor sorghum - (species)	Sorghum bicolor sorghum - (species)	MATE1/AltSB/SbMATE	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator
phytochrome B (PHYB)	Light sensitivity	Coding, Deletion	Sorghum bicolor sorghum - (species) D	Domesticated	Linkage Mapping	Childs KL; Miller FR; Cordonnier-Pratt MM ; et al. (1997) The sorghum photoperiod sensitivity gene, Ma3, encodes a phytochrome B.	GP00000872	PHYB P14713	Physiology	1bp deletion 30bp upstream of the stop codon	Sorghum bicolor sorghum - (species)	Sorghum bicolor sorghum - (species) D	phytochrome B (PHYB)	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator
PRR37 pseudoresponse regulator protein 37	Flowering time	Coding, Deletion N	Sorghum bicolor sorghum - (species) D	Domesticated	Linkage Mapping	Murphy RL; Klein RR; Morishige DT ; et al. (2011) Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photop[...]	GP00000930	PRR37 Q0D3B6	Physiology	1bp deletion resulting in frameshift N	Sorghum bicolor sorghum - (species)	Sorghum bicolor sorghum - (species) D	PRR37 pseudoresponse regulator protein 37	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator
PRR37 pseudoresponse regulator protein 37	Flowering time	2 Mutations: Coding SNP N	Sorghum bicolor sorghum - (species)	Domesticated	Linkage Mapping	Murphy RL; Klein RR; Morishige DT ; et al. (2011) Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photop[...]	GP00000931	PRR37 Q0D3B6	Physiology	2 mutations	Sorghum bicolor sorghum - (species)	Sorghum bicolor sorghum - (species)	PRR37 pseudoresponse regulator protein 37	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator
PRR37 pseudoresponse regulator protein 37	Flowering time	Coding, SNP	Sorghum bicolor sorghum - (species)	Domesticated	Linkage Mapping	Murphy RL; Klein RR; Morishige DT ; et al. (2011) Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photop[...]	GP00000932	PRR37 Q0D3B6	Physiology	K162N	Sorghum bicolor sorghum - (species)	Sorghum bicolor sorghum - (species)	PRR37 pseudoresponse regulator protein 37	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator
Shattering1 - Sh1	Seed shattering	Coding, Deletion N	Sorghum bicolor sorghum - (species) D	Domesticated	Linkage Mapping	Lin Z; Li X; Shannon LM ; et al. (2012) Parallel domestication of the Shattering1 genes in cereals.	GP00001040	YAB2 Q10FZ7	Physiology	2.2kb deletion at the location of exons 2 and 3 N	Sorghum virgatum (species)	Sorghum bicolor sorghum - (species) D	Shattering1 - Sh1	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator
Shattering1 - Sh1	Seed shattering	Coding, Complex Change	Sorghum bicolor sorghum - (species)	Domesticated	Linkage Mapping	Lin Z; Li X; Shannon LM ; et al. (2012) Parallel domestication of the Shattering1 genes in cereals.	GP00001041	YAB2 Q10FZ7	Physiology	two promoter variants at positions -1194 and -1185	Sorghum virgatum (species)	Sorghum bicolor sorghum - (species)	Shattering1 - Sh1	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator
Shattering1 - Sh1	Seed shattering	Coding, SNP	Sorghum bicolor sorghum - (species)	Domesticated	Linkage Mapping	Lin Z; Li X; Shannon LM ; et al. (2012) Parallel domestication of the Shattering1 genes in cereals.	GP00001042	YAB2 Q10FZ7	Physiology	GT-to-GG splice-site variant	Sorghum virgatum (species)	Sorghum bicolor sorghum - (species)	Shattering1 - Sh1	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator
Y	Coloration (fruit)	Coding, Insertion	Sorghum bicolor sorghum - (species) D	Domesticated	Candidate Gene	Chopra S; Brendel V; Zhang J ; et al. (1999) Molecular characterization of a mutable pigmentation phenotype and isolation of the first active tra[...]	GP00002068	P1 O24579	Morphology	insertion of a transposable element named Candystripe1 (Cs1) in the second intron of the Y gene - Cs1 is 23,018 bp in size and is bordered by 20-bp terminal inverted repeat sequences. It generated a 3-bp target site duplication upon insertion within the Y gene. Cs1 shares features of the CACTA superfamily of transposons.	Sorghum bicolor sorghum - (species)	Sorghum bicolor sorghum - (species) D	Y	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator