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Gene	Trait	Mutation	Taxon B	Taxonomic Status	Evidence	Main Reference	Gephe ID	UniProtKB	Trait Category	Mutation Details	Taxon A	Taxon B	Edit Gene-GePhe	Taxon B	Status
Chalk5	Grain chalkiness Amylose content Grain yield	Cis-regulatory, SNP	Oryza sativa rice - (species)	Intraspecific	Linkage Mapping	Li Y; Fan C; Xing Y ; et al. (2014) Chalk5 encodes a vacuolar H(+)-translocating pyrophosphatase influencing grain chalkiness in rice.	GP00001309	Chalk5 A2Y0L3	Morphology Physiology Physiology	Two candidate SNPs at positions -721 and - 485 in promoter region	Oryza sativa rice - (species)	Oryza sativa rice - (species)	Chalk5	Oryza sativa rice - (species)	Published - Accepted by Curator
DEP1	Grain yield	Coding, Indel N	Oryza sativa rice - (species) D	Domesticated	Linkage Mapping	Huang X; Qian Q; Liu Z ; et al. (2009) Natural variation at the DEP1 locus enhances grain yield in rice.	GP00000218	P0046G12.12-1 Q67UU9	Morphology	replacement of a 637bp stretch of the middle of exon5 by a 12-bp sequence creating a premature stop codon and consequently a loss of 230 residues from the C-terminus N	Oryza sativa rice - (species)	Oryza sativa rice - (species) D	DEP1	Oryza sativa rice - (species)	Published - Accepted by Curator
OsCKX2=Gn1a	Grain yield	Coding, Deletion N	Oryza sativa rice - (species) D	Domesticated	Linkage Mapping	Ashikari M; Sakakibara H; Lin S ; et al. (2005) Cytokinin oxidase regulates rice grain production.	GP00000807	CKX2 Q4ADV8	Morphology	11bp deletion causing premature stop codon N	Oryza sativa rice - (species)	Oryza sativa rice - (species) D	OsCKX2=Gn1a	Oryza sativa rice - (species)	Published - Accepted by Curator
OsCKX2=Gn1a	Grain yield	Cis-regulatory, Unknown	Oryza sativa rice - (species)	Domesticated	Linkage Mapping	Ashikari M; Sakakibara H; Lin S ; et al. (2005) Cytokinin oxidase regulates rice grain production.	GP00000808	CKX2 Q4ADV8	Morphology	Not identified	Oryza sativa rice - (species)	Oryza sativa rice - (species)	OsCKX2=Gn1a	Oryza sativa rice - (species)	Published - Accepted by Curator
OsCKX2=Gn1a	Grain yield	Cis-regulatory, Unknown	Triticum aestivum bread wheat - (species)	Domesticated	Linkage Mapping	Zhang L; Zhao YL; Gao LF ; et al. (2012) TaCKX6-D1, the ortholog of rice OsCKX2, is associated with grain weight in hexaploid wheat.	GP00000809	CKX2 Q4ADV8	Morphology	unknown	Triticum aestivum bread wheat - (species)	Triticum aestivum bread wheat - (species)	OsCKX2=Gn1a	Triticum aestivum bread wheat - (species)	Published - Accepted by Curator
OsSPL14 / WFP	Grain yield	Cis-regulatory, SNP	Oryza sativa rice - (species)	Domesticated	Linkage Mapping	Jiao Y; Wang Y; Xue D ; et al. (2010) Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. 1 Additional References Miura K; Ikeda M; Matsubara A (2010) OsSPL14 promotes panicle branching and higher grain productivity in rice.	GP00000813	IPA1 D8WJ58	Morphology	Point mutation resulting in altered binding of a micro-RNA	Oryza sativa rice - (species)	Oryza sativa rice - (species)	OsSPL14 / WFP	Oryza sativa rice - (species)	Published - Accepted by Curator
THOUSAND-GRAIN WEIGHT 6 (TGW6)	Grain yield	Coding, Deletion N	Oryza sativa rice - (species) D	Domesticated	Linkage Mapping	Ishimaru K; Hirotsu N; Madoka Y ; et al. (2013) Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yie[...]	GP00001126	TGW6 Q69U01	Morphology	-1bp at +313 resulting in truncated protein N	Oryza sativa rice - (species)	Oryza sativa rice - (species) D	THOUSAND-GRAIN WEIGHT 6 (TGW6)	Oryza sativa rice - (species)	Published - Accepted by Curator

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