Gephebase

Gephebase Search Results

This Summary Table shows only the major fields for each entry. If you are interested in other fields (gene synonyms, GO terms, molecular details of the mutation, comments, etc.), please export the .csv file, which contains the complete data for each entry. Please click on a GepheID if you want to see all information regarding a particular entry.

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Your research retrieved 21 results.

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Gene	Trait	Mutation	Taxon B	Taxonomic Status	Evidence	Main Reference	Gephe ID	UniProtKB	Trait Category	Mutation Details	Taxon A	Taxon B	Edit Gene-GePhe	Taxon B	Status
ALMT gene cluster	Metal tolerance	Gene Amplification, Indel	Secale cereale rye - (species)	Domesticated	Linkage Mapping	Collins NC; Shirley NJ; Saeed M ; et al. (2008) An ALMT1 gene cluster controlling aluminum tolerance at the Alt4 locus of rye (Secale cereale L).	GP00000079	ALMT1 Q76LB1	Physiology	Copy number Variant	Secale cereale rye - (species)	Secale cereale rye - (species)	ALMT gene cluster	Secale cereale rye - (species)	Published - Accepted by Curator
ALMT1	Metal tolerance	Cis-regulatory, Unknown	Triticum aestivum bread wheat - (species)	Domesticated	Linkage Mapping	Raman H; Zhang K; Cakir M ; et al. (2005) Molecular characterization and mapping of ALMT1, the aluminium-tolerance gene of bread wheat (Tritic[...] 2 Additional References Cai S; Bai GH; Zhang D (2008) Quantitative trait loci for aluminum resistance in Chinese wheat landrace FSW. Ryan PR; Raman H; Gupta S (2010) The multiple origins of aluminium resistance in hexaploid wheat include Aegilops tauschii and more r[...]	GP00000080	ALMT1 Q76LB1	Physiology	multiple regulatory changes	Triticum aestivum bread wheat - (species)	Triticum aestivum bread wheat - (species)	ALMT1	Triticum aestivum bread wheat - (species)	Published - Accepted by Curator
FPN2	Metal tolerance	Coding, Insertion N	Arabidopsis thaliana thale cress - (species) D	Intraspecific	Linkage Mapping	Morrissey J; Baxter IR; Lee J ; et al. (2009) The ferroportin metal efflux proteins function in iron and cobalt homeostasis in Arabidopsis.	GP00000354	IREG2 F4KGN5	Physiology	1bp insertion resulting in frameshift N	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species) D	FPN2	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
FRD3 (FERRIC REDUCTASE DEFECTIVE3)	Metal tolerance	2 Mutations: Coding SNP	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Pineau C; Loubet S; Lefoulon C ; et al. (2012) Natural variation at the FRD3 MATE transporter locus reveals cross-talk between Fe homeostasis and Z[...]	GP00000355	DTX43 Q9SFB0	Physiology	2 mutations	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	FRD3 (FERRIC REDUCTASE DEFECTIVE3)	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
heavy metal atpase3 (HMA3)	Metal tolerance	2 Mutations: Coding SNP	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Chao DY; Silva A; Baxter I ; et al. (2012) Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural v[...]	GP00000443	HMA3 P0CW78	Physiology	2 mutations	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	heavy metal atpase3 (HMA3)	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
heavy metal atpase3 (HMA3)	Metal tolerance	Coding, Deletion N	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Chao DY; Silva A; Baxter I ; et al. (2012) Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural v[...]	GP00000444	HMA3 P0CW78	Physiology	1-bp deletion resulting in a premature stop codon resulting in hypofunctional transporter. This is a high-frequency allele; suggesting the hyper-functional alleles are only selected in Cd-rich soils N	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	heavy metal atpase3 (HMA3)	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
heavy metal atpase3 (HMA3)	Metal tolerance	Coding, SNP	Oryza sativa rice - (species)	Domesticated	Linkage Mapping	Ueno D; Yamaji N; Kono I ; et al. (2010) Gene limiting cadmium accumulation in rice.	GP00000445	HMA3 P0CW78	Physiology	H80R	Oryza sativa rice - (species)	Oryza sativa rice - (species)	heavy metal atpase3 (HMA3)	Oryza sativa rice - (species)	Published - Accepted by Curator
heavy metal atpase3 (HMA3)	Metal tolerance	Gene Amplification, Complex Change	Noccaea caerulescens (species)	Intraspecific	Candidate Gene	Ueno D; Milner MJ; Yamaji N ; et al. (2011) Elevated expression of TcHMA3 plays a key role in the extreme Cd tolerance in a Cd-hyperaccumulating[...]	GP00000446	HMA3 P0CW78	Physiology	Copy number Variant	Noccaea caerulescens (species)	Noccaea caerulescens (species)	heavy metal atpase3 (HMA3)	Noccaea caerulescens (species)	Published - Accepted by Curator
heavy metal atpase4 (HMA4)	Metal tolerance	Unknown, Unknown	Arabidopsis halleri (species) D	Interspecific	Linkage Mapping	Courbot M; Willems G; Motte P ; et al. (2007) A major quantitative trait locus for cadmium tolerance in Arabidopsis halleri colocalizes with HMA4,[...]	GP00000447	HMA4 O64474	Physiology	unknown	Arabidopsis lyrata (species)	Arabidopsis halleri (species) D	heavy metal atpase4 (HMA4)	Arabidopsis halleri (species)	Published - Accepted by Curator
heavy metal atpase4 (HMA4)	Metal tolerance	Gene Amplification, Complex Change	Arabidopsis halleri (species)	Interspecific	Linkage Mapping	Hanikenne M; Talke IN; Haydon MJ ; et al. (2008) Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4. 1 Additional References Hanikenne M; Kroymann J; Trampczynska A (2013) Hard selective sweep and ectopic gene conversion in a gene cluster affording environmental adaptatio[...]	GP00000448	HMA4 O64474	Physiology	Gene duplication	Arabidopsis thaliana thale cress - (species)	Arabidopsis halleri (species)	heavy metal atpase4 (HMA4)	Arabidopsis halleri (species)	Published - Accepted by Curator
heavy metal atpase4 (HMA4)	Metal tolerance	Cis-regulatory, Unknown	Arabidopsis halleri (species)	Interspecific	Linkage Mapping	Hanikenne M; Talke IN; Haydon MJ ; et al. (2008) Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4. 1 Additional References Hanikenne M; Kroymann J; Trampczynska A (2013) Hard selective sweep and ectopic gene conversion in a gene cluster affording environmental adaptatio[...]	GP00000449	HMA4 O64474	Physiology	unknown	Arabidopsis thaliana thale cress - (species)	Arabidopsis halleri (species)	heavy metal atpase4 (HMA4)	Arabidopsis halleri (species)	Published - Accepted by Curator
heavy metal atpase5 (HMA5)	Metal tolerance	Coding, SNP	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Kobayashi Y; Kuroda K; Kimura K ; et al. (2008) Amino acid polymorphisms in strictly conserved domains of a P-type ATPase HMA5 are involved in the m[...]	GP00000450	HMA5 Q9SH30	Physiology	P626L	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	heavy metal atpase5 (HMA5)	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
heavy metal atpase5 (HMA5)	Metal tolerance	Coding, SNP	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Kobayashi Y; Kuroda K; Kimura K ; et al. (2008) Amino acid polymorphisms in strictly conserved domains of a P-type ATPase HMA5 are involved in the m[...]	GP00000451	HMA5 Q9SH30	Physiology	N923T	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	heavy metal atpase5 (HMA5)	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
MATE1/AltSB/SbMATE	Metal tolerance	Cis-regulatory, Unknown	Sorghum bicolor sorghum - (species)	Domesticated	Linkage Mapping	Magalhaes JV; Liu J; Guimarães CT ; et al. (2007) A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sor[...]	GP00000565		Physiology	unknown	Sorghum bicolor sorghum - (species)	Sorghum bicolor sorghum - (species)	MATE1/AltSB/SbMATE	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator
MATE1/ZmMATE1	Metal tolerance	Unknown, Unknown	Zea mays (species)	Domesticated	Candidate Gene	Maron LG; Piñeros MA; Guimarães CT ; et al. (2010) Two functionally distinct members of the MATE (multi-drug and toxic compound extrusion) family of tr[...]	GP00000566		Physiology	unknown	Zea mays (species)	Zea mays (species)	MATE1/ZmMATE1	Zea mays (species)	Published - Accepted by Curator
metal tolerance protein1	Metal tolerance	Gene Amplification, Complex Change	Arabidopsis halleri (species) D	Interspecific	Linkage Mapping	Dräger DB; Desbrosses-Fonrouge AG; Krach C ; et al. (2004) Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc toleranc[...] 1 Additional References Dräger DB; Desbrosses-Fonrouge AG; Krach C (2004) Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc toleranc[...]	GP00000652	MTP1 Q9ZT63	Physiology	Copy number Variant	Arabidopsis lyrata (species)	Arabidopsis halleri (species) D	metal tolerance protein1	Arabidopsis halleri (species)	Published - Accepted by Curator
metallothionein (Mtn)	Metal tolerance	Gene Amplification, Complex Change	Drosophila melanogaster fruit fly - (species)	Intraspecific	Candidate Gene	Otto E; Young JE; Maroni G (1986) Structure and expression of a tandem duplication of the Drosophila metallothionein gene. 1 Additional References Maroni G; Wise J; Young JE (1987) Metallothionein gene duplications and metal tolerance in natural populations of Drosophila melanogas[...]	GP00000653	MtnA P04357	Physiology	Gene duplication	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	metallothionein (Mtn)	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
Molybdenum transporter1 (MOT1)	Metal tolerance	Cis-regulatory, Deletion	Arabidopsis thaliana thale cress - (species) D	Intraspecific	Linkage Mapping	Baxter I; Muthukumar B; Park HC ; et al. (2008) Variation in molybdenum content across broadly distributed populations of Arabidopsis thaliana is co[...] 1 Additional References Forsberg SK; Andreatta ME; Huang XY (2015) The Multi-allelic Genetic Architecture of a Variance-Heterogeneity Locus for Molybdenum Concentratio[...]	GP00000676	MOT1 Q9SL95	Physiology	53bp deletion in promoter	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species) D	Molybdenum transporter1 (MOT1)	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
Molybdenum transporter1 (MOT1)	Metal tolerance	Gene Amplification, Insertion	Arabidopsis thaliana thale cress - (species) D	Intraspecific	Association Mapping	Forsberg SK; Andreatta ME; Huang XY ; et al. (2015) The Multi-allelic Genetic Architecture of a Variance-Heterogeneity Locus for Molybdenum Concentratio[...]	GP00000677	MOT1 Q9SL95	Physiology	330bp duplication followed by minor indels	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species) D	Molybdenum transporter1 (MOT1)	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
Molybdenum transporter1 (MOT1)	Metal tolerance	Coding, SNP	Arabidopsis thaliana thale cress - (species) D	Intraspecific	Linkage Mapping	Poormohammad Kiani S; Trontin C; Andreatta M ; et al. (2012) Allelic heterogeneity and trade-off shape natural variation for response to soil micronutrient.	GP00001270	MOT1 Q9SL95	Physiology	D104Y	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species) D	Molybdenum transporter1 (MOT1)	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
Nramp aluminum transporter1	Metal tolerance	2 Mutations: Coding SNP	Oryza sativa rice - (species)	Domesticated	Linkage Mapping	Famoso AN; Zhao K; Clark RT ; et al. (2011) Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide ass[...]	GP00000740	NRAT1 Q6ZG85	Physiology	2 mutations	Oryza sativa rice - (species)	Oryza sativa rice - (species)	Nramp aluminum transporter1	Oryza sativa rice - (species)	Published - Accepted by Curator