Gephebase

Gephebase Search Results

This Summary Table shows only the major fields for each entry. If you are interested in other fields (gene synonyms, GO terms, molecular details of the mutation, comments, etc.), please export the .csv file, which contains the complete data for each entry. Please click on a GepheID if you want to see all information regarding a particular entry.

Advanced Search

Field

Term

Summary Table

Your research retrieved 16 results.

Summary
Others

Gene	Trait	Mutation	Taxon B	Taxonomic Status	Evidence	Main Reference	Gephe ID	UniProtKB	Trait Category	Mutation Details	Taxon A	Taxon B	Edit Gene-GePhe	Taxon B	Status
Abcb4	Biliary Phospholipid Level (low)	Coding, Unknown N	Cavia porcellus domestic guinea pig - (species)	Intergeneric or Higher	Association Mapping	Hiller M; Schaar BT; Indjeian VB ; et al. (2012) A "forward genomics" approach links genotype to phenotype using independent phenotypic losses among [...]	GP00000008	Abcb4 P21440	Physiology	pseudogenization N	Mammalia mammals - (class)	Cavia porcellus domestic guinea pig - (species)	Abcb4	Cavia porcellus domestic guinea pig - (species)	Published - Accepted by Curator
Abcb4	Biliary Phospholipid Level (low)	Coding, Unknown N	Equus caballus horse - (species)	Intergeneric or Higher	Association Mapping	Hiller M; Schaar BT; Indjeian VB ; et al. (2012) A "forward genomics" approach links genotype to phenotype using independent phenotypic losses among [...]	GP00000009	Abcb4 P21440	Physiology	pseudogenization N	Mammalia mammals - (class)	Equus caballus horse - (species)	Abcb4	Equus caballus horse - (species)	Published - Accepted by Curator
Fezf2	Cerebral cortex layered organization	Cis-regulatory, Complex Change	Mammalia mammals - (class) D	Intergeneric or Higher	Candidate Gene	Shim S; Kwan KY; Li M ; et al. (2012) Cis-regulatory control of corticospinal system development and evolution.	GP00000307	Fezf2 Q9ESP5	Morphology	Acquisition of SOX binding sites in enhancer E4	Amniota amniotes - (no rank)	Mammalia mammals - (class) D	Fezf2	Mammalia mammals - (class)	Published - Accepted by Curator
GLUD2 retrogene	Gene expression change (novel expression domain in testicles and brain)	Gene Amplification, Complex Change	Hominidae great apes - (family) D	Intergeneric or Higher	Candidate Gene	Burki F; Kaessmann H (2004) Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux. 1 Additional References Rosso L; Marques AC; Reichert AS (2008) Mitochondrial targeting adaptation of the hominoid-specific glutamate dehydrogenase driven by positi[...]	GP00000405	GLUD2 P49448	Physiology	Retroduplication; + E7K enhancing mitochondrial targeting	Mammalia mammals - (class)	Hominidae great apes - (family) D	GLUD2 retrogene	Hominidae great apes - (family)	Published - Accepted by Curator
Gulo	Vitamin-C synthesis (loss)	Coding, Complex Change N	Cavia porcellus domestic guinea pig - (species)	Intergeneric or Higher	Association Mapping	Hiller M; Schaar BT; Indjeian VB ; et al. (2012) A "forward genomics" approach links genotype to phenotype using independent phenotypic losses among [...]	GP00000420	Gulo P58710	Physiology	pseudogenization involving invalidating mutations at most exons N	Mammalia mammals - (class)	Cavia porcellus domestic guinea pig - (species)	Gulo	Cavia porcellus domestic guinea pig - (species)	Published - Accepted by Curator
Gulo	Vitamin-C synthesis (loss)	Coding, Complex Change N	Myotis lucifugus little brown bat - (species)	Intergeneric or Higher	Association Mapping	Hiller M; Schaar BT; Indjeian VB ; et al. (2012) A "forward genomics" approach links genotype to phenotype using independent phenotypic losses among [...]	GP00000421	Gulo P58710	Physiology	pseudogenization N	Mammalia mammals - (class)	Myotis lucifugus little brown bat - (species)	Gulo	Myotis lucifugus little brown bat - (species)	Published - Accepted by Curator
Gulo	Vitamin-C synthesis (loss)	Coding, Complex Change N	Primates (order)	Intergeneric or Higher	Association Mapping	Hiller M; Schaar BT; Indjeian VB ; et al. (2012) A "forward genomics" approach links genotype to phenotype using independent phenotypic losses among [...]	GP00000422	Gulo P58710	Physiology	pseudogenization N	Mammalia mammals - (class)	Primates (order)	Gulo	Primates (order)	Published - Accepted by Curator
Gulo	Vitamin-C synthesis (loss)	Coding, Complex Change N	Pteropus vampyrus large flying fox - (species)	Intergeneric or Higher	Association Mapping	Hiller M; Schaar BT; Indjeian VB ; et al. (2012) A "forward genomics" approach links genotype to phenotype using independent phenotypic losses among [...]	GP00000423	Gulo P58710	Physiology	pseudogenization N	Mammalia mammals - (class)	Pteropus vampyrus large flying fox - (species)	Gulo	Pteropus vampyrus large flying fox - (species)	Published - Accepted by Curator
hemoglobin; HBA	Hypoxia response	Coding, SNP	Lama (genus)	Interspecific	Candidate Gene	Kleinschmidt T; März J; Jürgens KD ; et al. (1986) Interaction of allosteric effectors with alpha-globin chains and high altitude respiration of mammal[...]	GP00000454	HBA1 P69905	Physiology	Asp122His	Mammalia mammals - (class)	Lama (genus)	hemoglobin; HBA	Lama (genus)	Published - Accepted by Curator
lysozyme	Digestion (anaerobic enzymatic activity)	5 Mutations: Coding SNP	Bos taurus cattle - (species)	Intergeneric or Higher	Candidate Gene	Stewart CB; Schilling JW; Wilson AC (1987 Nov 26-Dec 2) Adaptive evolution in the stomach lysozymes of foregut fermenters. 1 Additional References Kornegay JR; Schilling JW; Wilson AC (1994) Molecular adaptation of a leaf-eating bird: stomach lysozyme of the hoatzin.	GP00000557	LYZ1 P04421	Physiology	5 mutations	Mammalia mammals - (class)	Bos taurus cattle - (species)	lysozyme	Bos taurus cattle - (species)	Published - Accepted by Curator
opsin - rhodopsin (LWS)	Color vision (blue-shift)	Coding, SNP	Tursiops truncatus bottlenose dolphin - (species) D	Intergeneric or Higher	Candidate Gene	Fasick JI; Robsinson PR (1998) Mechanism of spectral tuning in the dolphin visual pigments.	GP00001703	OPN1LW P04000	Physiology	A292S	Mammalia mammals - (class)	Tursiops truncatus bottlenose dolphin - (species) D	opsin - rhodopsin (LWS)	Tursiops truncatus bottlenose dolphin - (species)	Published - Accepted by Curator
opsin - rhodopsin1 (RH1)	Color vision (blue-shift)	3 Mutations: Coding SNP	Tursiops truncatus bottlenose dolphin - (species)	Intergeneric or Higher	Candidate Gene	Fasick JI; Robsinson PR (1998) Mechanism of spectral tuning in the dolphin visual pigments. 2 Additional References Sugawara T; Imai H; Nikaido M (2010) Vertebrate rhodopsin adaptation to dim light via rapid meta-II intermediate formation. Yokoyama S; Tada T; Zhang H (2008) Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrate[...]	GP00000787	RHO P08100	Physiology	3 mutations	Mammalia mammals - (class)	Tursiops truncatus bottlenose dolphin - (species)	opsin - rhodopsin1 (RH1)	Tursiops truncatus bottlenose dolphin - (species)	Published - Accepted by Curator
opsin - rhodopsin1 (RH1)	Color vision (blue-shift)	Coding, SNP	Elephantidae elephants - (family)	Intergeneric or Higher	Candidate Gene	Yokoyama S; Takenaka N; Agnew DW ; et al. (2005) Elephants and human color-blind deuteranopes have identical sets of visual pigments. 1 Additional References Yokoyama S; Tada T; Zhang H (2008) Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrate[...]	GP00000788	RHO P08100	Physiology	D83N	Mammalia mammals - (class)	Elephantidae elephants - (family)	opsin - rhodopsin1 (RH1)	Elephantidae elephants - (family)	Published - Accepted by Curator
opsin - rhodopsin1 (RH1)	Color vision (blue-shift)	2 Mutations: Coding SNP	Cetacea whales - (order)	Intergeneric or Higher	Candidate Gene	Meredith RW; Gatesy J; Emerling CA ; et al. (2013) Rod monochromacy and the coevolution of cetacean retinal opsins.	GP00000791	RHO P08100	Physiology	2 mutations	Mammalia mammals - (class)	Cetacea whales - (order)	opsin - rhodopsin1 (RH1)	Cetacea whales - (order)	Published - Accepted by Curator
TAS1R2	Taste sensitivity (sugar)	Coding, Deletion N	Felidae cat family - (family) D	Intergeneric or Higher	Candidate Gene	Li X; Li W; Wang H ; et al. (2005) Pseudogenization of a sweet-receptor gene accounts for cats' indifference toward sugar. 1 Additional References Li X; Li W; Wang H (2006) Cats lack a sweet taste receptor.	GP00001109	TAS1R2 Q8TE23	Physiology	247bp deletion in exon 3 and stop codons in exons 4 and 6. N	Mammalia mammals - (class)	Felidae cat family - (family) D	TAS1R2	Felidae cat family - (family)	Published - Accepted by Curator
Uncoupling protein 1 (UCP1)	Thermoregulation (brown adipose tissue)	Coding, Deletion N	Sus (genus) D	Intergeneric or Higher	Candidate Gene	Berg F; Gustafson U; Andersson L (2006) The uncoupling protein 1 gene (UCP1) is disrupted in the pig lineage: a genetic explanation for poor[...]	GP00001162	Ucp1 P12242	Physiology	deletion of exons 3 to 5 N	Mammalia mammals - (class)	Sus (genus) D	Uncoupling protein 1 (UCP1)	Sus (genus)	Published - Accepted by Curator