Gephebase

Gephebase Search Results

This Summary Table shows only the major fields for each entry. If you are interested in other fields (gene synonyms, GO terms, molecular details of the mutation, comments, etc.), please export the .csv file, which contains the complete data for each entry. Please click on a GepheID if you want to see all information regarding a particular entry.

Advanced Search

Field

Term

Summary Table

Your research retrieved 25 results.

Summary
Others

Gene	Trait	Mutation	Taxon B	Taxonomic Status	Evidence	Main Reference	Gephe ID	UniProtKB	Trait Category	Mutation Details	Taxon A	Taxon B	Edit Gene-GePhe	Taxon B	Status
btr1	Seed shattering (grain dispersal ; retention)	Coding, Deletion N	Hordeum vulgare subsp. vulgare domesticated barley - (subspecies) D	Domesticated	Linkage Mapping	Pourkheirandish M; Hensel G; Kilian B ; et al. (2015) Evolution of the Grain Dispersal System in Barley.	GP00001445	BTR1 A0A0K1RJT0	Physiology	1bp deletion at position 202 inducing a frameshift N	Hordeum vulgare (species)	Hordeum vulgare subsp. vulgare domesticated barley - (subspecies) D	btr1	Hordeum vulgare subsp. vulgare domesticated barley - (subspecies)	Published - Accepted by Curator
btr2	Seed shattering (grain dispersal ; retention)	Coding, Deletion N	Hordeum vulgare subsp. vulgare domesticated barley - (subspecies) D	Domesticated	Linkage Mapping	Pourkheirandish M; Hensel G; Kilian B ; et al. (2015) Evolution of the Grain Dispersal System in Barley.	GP00001446	BTR2 A0A0K1RKV9	Physiology	11bp deletion at position 254-264 creating a frameshift N	Hordeum vulgare (species)	Hordeum vulgare subsp. vulgare domesticated barley - (subspecies) D	btr2	Hordeum vulgare subsp. vulgare domesticated barley - (subspecies)	Published - Accepted by Curator
CBF2-CBF4; CBF13	Temperature tolerance (cold)	Gene Amplification, Complex Change	Hordeum vulgare (species)	Domesticated	Candidate Gene	Knox AK; Dhillon T; Cheng H ; et al. (2010) CBF gene copy number variation at Frost Resistance-2 is associated with levels of freezing tolerance[...]	GP00000176	B1NSN2	Physiology	tandem duplication of CBF2-CBF4 region and/or pseudogenisation of CBF13	Hordeum vulgare (species)	Hordeum vulgare (species)	CBF2-CBF4; CBF13	Hordeum vulgare (species)	Published - Accepted by Curator
CENTRORADIALIS (HvCEN)	Flowering time Seasonal growth	Coding, SNP	Hordeum vulgare (species)	Domesticated	Linkage Mapping	Comadran J; Kilian B; Russell J ; et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and [...]	GP00000179	CEN Q9ZNV5	Physiology Physiology	P135A	Hordeum vulgare (species)	Hordeum vulgare (species)	CENTRORADIALIS (HvCEN)	Hordeum vulgare (species)	Published - Accepted by Curator
cly1	Pollen shedding (Cleistogamy; lodicule size)	Cis-regulatory, SNP	Hordeum vulgare (species) D	Domesticated	Linkage Mapping	Nair SK; Wang N; Turuspekov Y ; et al. (2010) Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage[...] 1 Additional References Turuspekov Y; Mano Y; Honda I (2004) Identification and mapping of cleistogamy genes in barley.	GP00001314	AP2 P47927	Morphology	A>G @position 3084; in a miRNA targeting site.	Hordeum vulgare (species)	Hordeum vulgare (species) D	cly1	Hordeum vulgare (species)	Published - Accepted by Curator
cly1	Pollen shedding (Cleistogamy; lodicule size)	Cis-regulatory, SNP	Hordeum vulgare (species) D	Domesticated	Linkage Mapping	Nair SK; Wang N; Turuspekov Y ; et al. (2010) Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage[...] 1 Additional References Turuspekov Y; Mano Y; Honda I (2004) Identification and mapping of cleistogamy genes in barley.	GP00001315	AP2 P47927	Morphology	A>C @position 3090; in a miRNA targeting site.	Hordeum vulgare (species)	Hordeum vulgare (species) D	cly1	Hordeum vulgare (species)	Published - Accepted by Curator
cly1	Pollen shedding (Cleistogamy; lodicule size)	Cis-regulatory, Epigenetic Change	Hordeum vulgare (species) D	Domesticated	Linkage Mapping	Wang N; Ning S; Wu J ; et al. (2015) An epiallele at cly1 affects the expression of floret closing (cleistogamy) in barley.	GP00001316	AP2 P47927	Morphology	T>C @position -245; creating differential methylation	Hordeum vulgare (species)	Hordeum vulgare (species) D	cly1	Hordeum vulgare (species)	Published - Accepted by Curator
EARLY FLOWERING 3 (here = Mat-a)	Flowering time	Coding, Deletion N	Hordeum vulgare (species) D	Domesticated	Linkage Mapping	Zakhrabekova S; Gough SP; Braumann I ; et al. (2012) Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range e[...]	GP00000243	ELF3 O82804	Physiology	4bp deletion resulting in truncated protein ; this deletion seem to have evolved multiple times (fragile site?) N	Hordeum vulgare (species)	Hordeum vulgare (species) D	EARLY FLOWERING 3 (here = Mat-a)	Hordeum vulgare (species)	Published - Accepted by Curator
EARLY FLOWERING 3/ EARLY MATURITY 8	Flowering time	Coding, SNP N	Hordeum vulgare (species)	Domesticated	Linkage Mapping	Faure S; Turner AS; Gruszka D ; et al. (2012) Mutation at the circadian clock gene EARLY MATURITY 8 adapts domesticated barley (Hordeum vulgare) t[...]	GP00000245	ELF3 O82804	Physiology	Premature stop codon; C-to-T point mutation in exon 2 N	Hordeum vulgare (species)	Hordeum vulgare (species)	EARLY FLOWERING 3/ EARLY MATURITY 8	Hordeum vulgare (species)	Published - Accepted by Curator
EARLY FLOWERING 3/ EARLYMATURITY8	Flowering time	Coding, Deletion N	Hordeum vulgare (species) D	Domesticated	Linkage Mapping	Faure S; Turner AS; Gruszka D ; et al. (2012) Mutation at the circadian clock gene EARLY MATURITY 8 adapts domesticated barley (Hordeum vulgare) t[...]	GP00000246	ELF3 O82804	Physiology	4bp deletion resulting in truncated protein ; this deletion seem to have evolved multiple times (fragile site?) N	Hordeum vulgare (species)	Hordeum vulgare (species) D	EARLY FLOWERING 3/ EARLYMATURITY8	Hordeum vulgare (species)	Published - Accepted by Curator
Flowering locus T (=HvFT=VRN3)	Flowering time	Cis-regulatory, Unknown	Hordeum vulgare (species)	Domesticated	Linkage Mapping	Yan L; Fu D; Li C ; et al. (2006) The wheat and barley vernalization gene VRN3 is an orthologue of FT.	GP00000343	FT Q9SXZ2	Physiology	Regulatory variation in first intron	Hordeum vulgare (species)	Hordeum vulgare (species)	Flowering locus T (=HvFT=VRN3)	Hordeum vulgare (species)	Published - Accepted by Curator
Hooded	Flower morphology	Cis-regulatory, Insertion	Hordeum vulgare (species) D	Domesticated	Linkage Mapping	Müller KJ; Romano N; Gerstner O ; et al. (1995) The barley Hooded mutation caused by a duplication in a homeobox gene intron.	GP00000488	KNOX3 Q43484	Morphology	305bp duplication in intron 4	Hordeum vulgare (species)	Hordeum vulgare (species) D	Hooded	Hordeum vulgare (species)	Published - Accepted by Curator
HvbHLH1	Coloration	Coding, Deletion N	Hordeum vulgare (species) D	Domesticated	Association Mapping	Cockram J; White J; Zuluaga DL ; et al. (2010) Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genom[...]	GP00000493	bHLH1 E5FCX3	Morphology	16bp deletion resulting in premature stop codon N	Hordeum vulgare (species)	Hordeum vulgare (species) D	HvbHLH1	Hordeum vulgare (species)	Published - Accepted by Curator
Mla1	Pathogen resistance	Coding, SNP	Hordeum vulgare (species)	Domesticated	Linkage Mapping	Mahadevappa M; Descenzo RA; Wise RP (1994) Recombination of alleles conferring specific resistance to powdery mildew at the Mla locus in barley[...] 3 Additional References Wei F; Gobelman-Werner K; Morroll SM (1999) The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppr[...] Halterman D; Zhou F; Wei F (2001) The MLA6 coiled-coil, NBS-LRR protein confers AvrMla6-dependent resistance specificity to Blumeria g[...] Jordan T; Seeholzer S; Schwizer S (2011) The wheat Mla homologue TmMla1 exhibits an evolutionarily conserved function against powdery mildew [...]	GP00000668	Mla1 Q7EXP5	Physiology	Coding variation in the LRR domain - exact amino acid change unknown	Hordeum vulgare (species)	Hordeum vulgare (species)	Mla1	Hordeum vulgare (species)	Published - Accepted by Curator
Mla13	Pathogen resistance	Coding, SNP	Hordeum vulgare (species)	Domesticated	Linkage Mapping	Mahadevappa M; Descenzo RA; Wise RP (1994) Recombination of alleles conferring specific resistance to powdery mildew at the Mla locus in barley[...] 2 Additional References Wei F; Gobelman-Werner K; Morroll SM (1999) The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppr[...] Halterman D; Zhou F; Wei F (2001) The MLA6 coiled-coil, NBS-LRR protein confers AvrMla6-dependent resistance specificity to Blumeria g[...]	GP00000670	Mla1 Q7EXP5	Physiology	Coding variation in the LRR domain - exact amino acid change unknown	Hordeum vulgare (species)	Hordeum vulgare (species)	Mla13	Hordeum vulgare (species)	Published - Accepted by Curator
Mla6	Pathogen resistance	Coding, SNP	Hordeum vulgare (species)	Domesticated	Linkage Mapping	Mahadevappa M; Descenzo RA; Wise RP (1994) Recombination of alleles conferring specific resistance to powdery mildew at the Mla locus in barley[...] 2 Additional References Wei F; Gobelman-Werner K; Morroll SM (1999) The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppr[...] Halterman D; Zhou F; Wei F (2001) The MLA6 coiled-coil, NBS-LRR protein confers AvrMla6-dependent resistance specificity to Blumeria g[...]	GP00000671	Mla1 Q7EXP5	Physiology	Coding variation in the LRR domain - exact amino acid change(s) unknown	Hordeum vulgare (species)	Hordeum vulgare (species)	Mla6	Hordeum vulgare (species)	Published - Accepted by Curator
MLO	Pathogen resistance	Gene Amplification, Insertion	Hordeum vulgare (species) D	Domesticated	Linkage Mapping	Piffanelli P; Ramsay L; Waugh R ; et al. (2004) A barley cultivation-associated polymorphism conveys resistance to powdery mildew.	GP00000672	MLO P93766	Physiology	Tandem array duplication including promoter and partial CDS; resulting in loss-of-function by transcriptional interference	Hordeum vulgare (species)	Hordeum vulgare (species) D	MLO	Hordeum vulgare (species)	Published - Accepted by Curator
PRR37-like Photoperiod-H1 (Ppd-H1)	Flowering time	Unknown, Unknown	Hordeum vulgare (species)	Domesticated	Linkage Mapping	Turner A; Beales J; Faure S ; et al. (2005) The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. 1 Additional References Campoli C; Shtaya M; Davis SJ (2012) Expression conservation within the circadian clock of a monocot: natural variation at barley Ppd-H1 [...]	GP00000933	PRR37 Q0D3B6	Physiology	unknown	Hordeum vulgare (species)	Hordeum vulgare (species)	PRR37-like Photoperiod-H1 (Ppd-H1)	Hordeum vulgare (species)	Published - Accepted by Curator
teosinte branched 1 (tb1) = IntC	Plant architecture Inflorescence architecture	Coding, Unknown	Hordeum vulgare (species)	Domesticated	Association Mapping	Ramsay L; Comadran J; Druka A ; et al. (2011) INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domes[...]	GP00001117	TB1 Q93WI2	Morphology Morphology	Large haplotypes; unknown	Hordeum vulgare (species)	Hordeum vulgare (species)	teosinte branched 1 (tb1) = IntC	Hordeum vulgare (species)	Published - Accepted by Curator
TFL1 / HvCEN	Growth determination habit	Coding, SNP	Hordeum vulgare (species)	Domesticated	Linkage Mapping	Comadran J; Kilian B; Russell J ; et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and [...]	GP00001119	TFL1 P93003	Physiology	P135A	Hordeum vulgare (species)	Hordeum vulgare (species)	TFL1 / HvCEN	Hordeum vulgare (species)	Published - Accepted by Curator
VRN2	Flowering time	Gene Loss, Deletion N	Hordeum vulgare (species)	Domesticated	Linkage Mapping	Yan L; Loukoianov A; Blechl A ; et al. (2004) The wheat VRN2 gene is a flowering repressor down-regulated by vernalization.	GP00001186	VRN2 Q8W5B1	Physiology	Large deletion N	Hordeum vulgare (species)	Hordeum vulgare (species)	VRN2	Hordeum vulgare (species)	Published - Accepted by Curator
VRS1 = SIX-ROWED SPIKE 1	Plant architecture Inflorescence architecture	Coding, Deletion N	Hordeum vulgare (species) D	Domesticated	Linkage Mapping	Komatsuda T; Pourkheirandish M; He C ; et al. (2007) Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. 1 Additional References Ramsay L; Comadran J; Druka A (2011) INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domes[...]	GP00001189	Vrs1 A1IHK8	Morphology Morphology	1bp deletion resulting in frameshift N	Hordeum vulgare (species)	Hordeum vulgare (species) D	VRS1 = SIX-ROWED SPIKE 1	Hordeum vulgare (species)	Published - Accepted by Curator
VRS1 = SIX-ROWED SPIKE 1	Plant architecture Inflorescence architecture	Coding, Insertion N	Hordeum vulgare (species) D	Domesticated	Linkage Mapping	Komatsuda T; Pourkheirandish M; He C ; et al. (2007) Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. 1 Additional References Ramsay L; Comadran J; Druka A (2011) INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domes[...]	GP00001190	Vrs1 A1IHK8	Morphology Morphology	1bp insertion resulting in frameshift N	Hordeum vulgare (species)	Hordeum vulgare (species) D	VRS1 = SIX-ROWED SPIKE 1	Hordeum vulgare (species)	Published - Accepted by Curator
VRS1 = SIX-ROWED SPIKE 1	Plant architecture Inflorescence architecture	Coding, SNP	Hordeum vulgare (species)	Domesticated	Linkage Mapping	Komatsuda T; Pourkheirandish M; He C ; et al. (2007) Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. 1 Additional References Ramsay L; Comadran J; Druka A (2011) INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domes[...]	GP00001191	Vrs1 A1IHK8	Morphology Morphology	Phe75Leu	Hordeum vulgare (species)	Hordeum vulgare (species)	VRS1 = SIX-ROWED SPIKE 1	Hordeum vulgare (species)	Published - Accepted by Curator
Waxy /GBSS	Amylose content	Cis-regulatory, Deletion	Hordeum vulgare (species) D	Domesticated	Linkage Mapping	Domon E; Fuijita M; Ishikawa N (2002) The insertion/deletion polymorphisms in the waxy gene of barley genetic resources from East Asia.	GP00001197	waxy Q8L699	Physiology	403-bp deletion spanning from position –129 bp to position +274 relative to the deduced starting point of transcription in the barley waxy gene and	Hordeum vulgare (species)	Hordeum vulgare (species) D	Waxy /GBSS	Hordeum vulgare (species)	Published - Accepted by Curator