Gephebase

Gephebase Search Results

This Summary Table shows only the major fields for each entry. If you are interested in other fields (gene synonyms, GO terms, molecular details of the mutation, comments, etc.), please export the .csv file, which contains the complete data for each entry. Please click on a GepheID if you want to see all information regarding a particular entry.

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Your research retrieved 255 results.

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Gene	Trait	Mutation	Taxon B	Taxonomic Status	Evidence	Main Reference	Gephe ID	UniProtKB	Trait Category	Mutation Details	Taxon A	Taxon B	Edit Gene-GePhe	Taxon B	Status
18-wheeler	Pathogen resistance	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Candidate Gene	Lazzaro BP; Sackton TB; Clark AG (2006) Genetic variation in Drosophila melanogaster resistance to infection: a comparison across bacteria.	GP00000001	18w A1ZBR2	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	18-wheeler	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
ABC transporter pvmrp1	Xenobiotic resistance (multiresistance to antimalarial drugs)	Unknown, Unknown	Plasmodium vivax malaria parasite P. vivax - (species)	Intraspecific	Association Mapping	Pearson RD; Amato R; Auburn S ; et al. (2016) Genomic analysis of local variation and recent evolution in Plasmodium vivax.	GP00001486	PVX_097025 A5KCN4	Physiology	unknown	Plasmodium vivax malaria parasite P. vivax - (species)	Plasmodium vivax malaria parasite P. vivax - (species)	ABC transporter pvmrp1	Plasmodium vivax malaria parasite P. vivax - (species)	Published - Accepted by Curator
ABCB1	Plant size (dwarfism)	Unknown, Unknown	Cenchrus americanus (species)	Domesticated	Linkage Mapping	Parvathaneni RK; Jakkula V; Padi FK ; et al. (2013) Fine-mapping and identification of a candidate gene underlying the d2 dwarfing phenotype in pearl mi[...]	GP00000006	ABCB1 Q9ZR72	Morphology	unknown	Cenchrus americanus (species)	Cenchrus americanus (species)	ABCB1	Cenchrus americanus (species)	Published - Accepted by Curator
ABCB7	Iron metabolism	Unknown, Unknown	Gasterosteus aculeatus three-spined stickleback - (species)	Intraspecific	Association Mapping	Jones FC; Chan YF; Schmutz J ; et al. (2012) A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence i[...]	GP00001379	ABCB7 O75027	Physiology	unknown	Gasterosteus aculeatus three-spined stickleback - (species)	Gasterosteus aculeatus three-spined stickleback - (species)	ABCB7	Gasterosteus aculeatus three-spined stickleback - (species)	Published - Accepted by Curator
ABCC2	Xenobiotic resistance (insecticide; Bt Cry1Ac)	Unknown, Unknown	Trichoplusia ni cabbage looper - (species) D	Intraspecific	Linkage Mapping	Baxter SW; Badenes-Pérez FR; Morrison A ; et al. (2011) Parallel evolution of Bacillus thuringiensis toxin resistance in lepidoptera.	GP00000014	ABCC2 A0A0E3ZDK3	Physiology	Not identified	Trichoplusia ni cabbage looper - (species)	Trichoplusia ni cabbage looper - (species) D	ABCC2	Trichoplusia ni cabbage looper - (species)	Published - Accepted by Curator
ABCG2	Milk yield	Unknown, Unknown	Ovis aries sheep - (species)	Domesticated	Candidate Gene	García-Fernández M; Gutiérrez-Gil B; Sánchez JP ; et al. (2011) The role of bovine causal genes underlying dairy traits in Spanish Churra sheep.	GP00000016	Abcg2 Q7TMS5	Physiology	unknown	Ovis aries sheep - (species)	Ovis aries sheep - (species)	ABCG2	Ovis aries sheep - (species)	Published - Accepted by Curator
Abdominal-B	Coloration (male-specific)	Unknown, Unknown	Drosophila malerkotliana (species)	Intraspecific	Linkage Mapping	Signor SA; Liu Y; Rebeiz M ; et al. (2016) Genetic Convergence in the Evolution of Male-Specific Color Patterns in Drosophila.	GP00001548	Abd-B P09087	Morphology	unknown	Drosophila malerkotliana (species)	Drosophila malerkotliana (species)	Abdominal-B	Drosophila malerkotliana (species)	Published - Accepted by Curator
Abdominal-B	Coloration (male-specific)	Unknown, Unknown	Drosophila merina (species)	Interspecific	Linkage Mapping	Signor SA; Liu Y; Rebeiz M ; et al. (2016) Genetic Convergence in the Evolution of Male-Specific Color Patterns in Drosophila.	GP00001549	Abd-B P09087	Morphology	unknown	Drosophila ercepeae (species)	Drosophila merina (species)	Abdominal-B	Drosophila merina (species)	Published - Accepted by Curator
ABO histo blood group glycosyltransferase	ABO antigen blood type	Unknown, Unknown	Pan troglodytes chimpanzee - (species)	Intraspecific	Candidate Gene	Kermarrec N; Roubinet F; Apoil PA ; et al. (1999) Comparison of allele O sequences of the human and non-human primate ABO system.	GP00000024	ABO P16442	Physiology	unknown	Pan troglodytes chimpanzee - (species)	Pan troglodytes chimpanzee - (species)	ABO histo blood group glycosyltransferase	Pan troglodytes chimpanzee - (species)	Published - Accepted by Curator
ADAMTS10	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Lettre G (2011) Recent progress in the study of the genetics of height.	GP00000050	ADAMTS10 Q9H324	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	ADAMTS10	Homo sapiens human - (species)	Published - Accepted by Curator
AGAMOUS-LIKE 50	Leaf number (at flowering time)	Unknown, Unknown	Arabidopsis thaliana thale cress - (species)	Intraspecific	Association Mapping	Seymour DK; Chae E; Grimm DG ; et al. (2016) Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids.	GP00001450	AGAMOUS-like 50 Q9XIE7	Morphology	unknown	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	AGAMOUS-LIKE 50	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
agrecan	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Lettre G (2011) Recent progress in the study of the genetics of height.	GP00000072	ACAN P16112	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	agrecan	Homo sapiens human - (species)	Published - Accepted by Curator
AIP	Xenobiotic resistance (pollution)	Unknown, Unknown N	Fundulus heteroclitus mummichog - (species) D	Intraspecific	Association Mapping	Reid NM; Proestou DA; Clark BW ; et al. (2016) The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish.	GP00001812	Aip O08915	Physiology	exact mutation(s) unknown - very good candidate gene according to association mapping and knowledge about the physiology N	Fundulus heteroclitus mummichog - (species)	Fundulus heteroclitus mummichog - (species) D	AIP	Fundulus heteroclitus mummichog - (species)	Published - Accepted by Curator
AIP	Xenobiotic resistance (pollution)	Unknown, Unknown N	Fundulus grandis Gulf killifish - (species) D	Intraspecific	Association Mapping	Oziolor EM; Reid NM; Yair S ; et al. (2019) Adaptive introgression enables evolutionary rescue from extreme environmental pollution.	GP00002670	Aip O08915	Physiology	exact mutation(s) unknown - very good candidate gene according to Fst and knowledge about the physiology N	Fundulus grandis Gulf killifish - (species)	Fundulus grandis Gulf killifish - (species) D	AIP	Fundulus grandis Gulf killifish - (species)	Published - Accepted by Curator
ALX1	Beak size	Unknown, Unknown	Geospiza (genus) D	Interspecific	Association Mapping	Lamichhaney S; Berglund J; Almén MS ; et al. (2015) Evolution of Darwin's finches and their beaks revealed by genome sequencing. 1 Additional References Almén MS; Lamichhaney S; Berglund J (2016) Adaptive radiation of Darwin's finches revisited using whole genome sequencing.	GP00000081	Alx1 Q8C8B0	Morphology	240kb haplotype with complex variation	Geospiza (genus)	Geospiza (genus) D	ALX1	Geospiza (genus)	Published - Accepted by Curator
ammonium transporter 2;1	Xenobiotic resistance (soil contamination; serpentine)	Unknown, Unknown	Arabidopsis arenosa (species) D	Intraspecific	Association Mapping	Arnold BJ; Lahner B; DaCosta JM ; et al. (2016) Borrowed alleles and convergence in serpentine adaptation.	GP00001431	AMT2 Q9M6N7	Physiology	seven aa substitutions	Arabidopsis arenosa (species)	Arabidopsis arenosa (species) D	ammonium transporter 2;1	Arabidopsis arenosa (species)	Published - Accepted by Curator
AMPD1 (=CG32626)	Drug resistance	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Linkage Mapping	Kislukhin G; King EG; Walters KN ; et al. (2013) The genetic architecture of methotrexate toxicity is similar in Drosophila melanogaster and humans.	GP00000083	AMPD1 P23109	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	AMPD1 (=CG32626)	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
AMPD1 [clinical; candidate gene study; added for insights on fly-human parallelism]	Drug resistance	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Candidate Gene	Wessels JA; van der Kooij SM; le Cessie S ; et al. (2007) A clinical pharmacogenetic model to predict the efficacy of methotrexate monotherapy in recent-onset[...]	GP00000084	AMPD1 P23109	Physiology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	AMPD1 [clinical; candidate gene study; added for insights on fly-human parallelism]	Homo sapiens human - (species)	Published - Accepted by Curator
APL1 cluster	Pathogen resistance (Plasmodium; malaria parasite)	Unknown, Unknown	Anopheles gambiae African malaria mosquito - (species) D	Intraspecific	Linkage Mapping	Riehle MM; Markianos K; Niaré O ; et al. (2006) Natural malaria infection in Anopheles gambiae is regulated by a single genomic control region. 1 Additional References Rottschaefer SM; Riehle MM; Coulibaly B (2011) Exceptional diversity, maintenance of polymorphism, and recent directional selection on the APL1 mal[...]	GP00000098	APL1A L7RQU1	Physiology	Not identified	Anopheles gambiae African malaria mosquito - (species)	Anopheles gambiae African malaria mosquito - (species) D	APL1 cluster	Anopheles gambiae African malaria mosquito - (species)	Published - Accepted by Curator
ARNT-1c	Xenobiotic resistance (pollution)	Unknown, Unknown N	Fundulus grandis Gulf killifish - (species) D	Intraspecific	Association Mapping	Oziolor EM; Reid NM; Yair S ; et al. (2019) Adaptive introgression enables evolutionary rescue from extreme environmental pollution.	GP00002672	P27540NULL	Physiology	exact mutation(s) unknown - very good candidate gene according to high differentiation region on chromosome 8 and knowledge about the physiology. ARNT1c is a nuclear dimerization partner of aryl hydrocarbon receptor (AHR) required for activation of the xenobiotic response pathway. N	Fundulus grandis Gulf killifish - (species)	Fundulus grandis Gulf killifish - (species) D	ARNT-1c	Fundulus grandis Gulf killifish - (species)	Published - Accepted by Curator
ARNT-L2a	Xenobiotic resistance (pollution)	Unknown, Unknown N	Fundulus grandis Gulf killifish - (species) D	Intraspecific	Association Mapping	Oziolor EM; Reid NM; Yair S ; et al. (2019) Adaptive introgression enables evolutionary rescue from extreme environmental pollution.	GP00002671	P27540NULL	Physiology	exact mutation(s) unknown - very good candidate gene according to high differentiation region on chromosome 10 and knowledge about the physiology. ARNT-L2a is a nuclear dimerization partner of aryl hydrocarbon receptor (AHR) required for activation of the xenobiotic response pathway. N	Fundulus grandis Gulf killifish - (species)	Fundulus grandis Gulf killifish - (species) D	ARNT-L2a	Fundulus grandis Gulf killifish - (species)	Published - Accepted by Curator
asparagine synthetase (AS)	Silk yield	Unknown, Unknown	Bombyx mori domestic silkworm - (species) D	Domesticated	Association Mapping	Xiang H; Liu X; Li M ; et al. (2018) The evolutionary road from wild moth to domestic silkworm. 1 Additional References Tong X; Han MJ; Lu K (2022) High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecologic[...]	GP00002404	AsnS Q7KTW9	Physiology		Bombyx mori domestic silkworm - (species)	Bombyx mori domestic silkworm - (species) D	asparagine synthetase (AS)	Bombyx mori domestic silkworm - (species)	Published - Accepted by Curator
AT5G41740/AT5G41750	Hybrid incompatibility (auto-immune necrosis)	Unknown, Unknown	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Bomblies K; Lempe J; Epple P ; et al. (2007) Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants.	GP00000105	MUF8.2 F4JYI4	Physiology	unknown	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	AT5G41740/AT5G41750	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
ATP2B4	Pathogen resistance (Plasmodium; malaria parasite)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Timmann C; Thye T; Vens M ; et al. (2012) Genome-wide association study indicates two novel resistance loci for severe malaria.	GP00000127	ATP2B4 P23634	Physiology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	ATP2B4	Homo sapiens human - (species)	Published - Accepted by Curator
ATXN1	Body fat distribution (attenuation)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Chu AY; Deng X; Fisher VA ; et al. (2017) Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyt[...]	GP00001552	ATXN1 P54253	Physiology	A>G in associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	ATXN1	Homo sapiens human - (species)	Published - Accepted by Curator
bab2	Fertility (ovariole number)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Linkage Mapping	Green DA; Extavour CG (2012) Convergent evolution of a reproductive trait through distinct developmental mechanisms in Drosophila[...] 1 Additional References Bergland AO; Genissel A; Nuzhdin SV (2008) Quantitative trait loci affecting phenotypic plasticity and the allometric relationship of ovariole [...]	GP00000132	bab2 Q9W0K4	Physiology	unknown ; loss of function reduces ovariole number	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	bab2	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
BAK1	Hematopoiesis (blood platelet count)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Guo MH; Nandakumar SK; Ulirsch JC ; et al. (2017) Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mech[...]	GP00001616	BAK1 Q16611	Physiology	A>G at the associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	BAK1	Homo sapiens human - (species)	Published - Accepted by Curator
Barren inflorescence2 (BIF2)	Plant architecture Inflorescence architecture	Unknown, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Pressoir G; Brown PJ; Zhu W ; et al. (2009) Natural variation in maize architecture is mediated by allelic differences at the PINOID co-ortholog[...] 1 Additional References Buckler ES; Holland JB; Bradbury PJ (2009) The genetic architecture of maize flowering time.	GP00000135	bif2 A6MW92	Morphology Morphology	unknown	Zea mays (species)	Zea mays (species)	Barren inflorescence2 (BIF2)	Zea mays (species)	Published - Accepted by Curator
BCO2 = beta-carotene oxygenase 2	Carotenoid content (sexual dichromatism, male-specific)	Unknown, Unknown	Serinus canaria common canary - (species)	Intergeneric or Higher	Linkage Mapping	Gazda MA; Araújo PM; Lopes RJ ; et al. (2020) A genetic mechanism for sexual dichromatism in birds.	GP00002139	BCO2 Q9BYV7	Morphology	Gene expression study suggests a cis-regulatory difference ; and coding mutations are unlikely to be causal	Spinus cucullatus red siskin - (species)	Serinus canaria common canary - (species)	BCO2 = beta-carotene oxygenase 2	Serinus canaria common canary - (species)	Published - Accepted by Curator
BCO2 = beta-carotene oxygenase 2	Coloration (feather)	Unknown, Unknown	Setophaga petechia yellow warbler - (species) D	Interspecific	Association Mapping	Baiz MD; Wood AW; Brelsford A ; et al. (2021) Pigmentation Genes Show Evidence of Repeated Divergence and Multiple Bouts of Introgression in Setop[...]	GP00002387	BCO2 Q9BYV7	Morphology		Setophaga pensylvanica Chestnut-sided warbler - (species)	Setophaga petechia yellow warbler - (species) D	BCO2 = beta-carotene oxygenase 2	Setophaga petechia yellow warbler - (species)	Published - Accepted by Curator
BCO2 = beta-carotene oxygenase 2	Coloration (feather)	Unknown, Unknown	Setophaga citrina hooded warbler - (species) D	Interspecific	Association Mapping	Baiz MD; Wood AW; Brelsford A ; et al. (2021) Pigmentation Genes Show Evidence of Repeated Divergence and Multiple Bouts of Introgression in Setop[...]	GP00002388	BCO2 Q9BYV7	Morphology		Setophaga ruticilla (species)	Setophaga citrina hooded warbler - (species) D	BCO2 = beta-carotene oxygenase 2	Setophaga citrina hooded warbler - (species)	Published - Accepted by Curator
BHLHE41	Hypoxia response	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Huerta-Sánchez E; Degiorgio M; Pagani L ; et al. (2013) Genetic signatures reveal high-altitude adaptation in a set of ethiopian populations.	GP00000144	BHLHE41 Q9C0J9	Physiology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	BHLHE41	Homo sapiens human - (species)	Published - Accepted by Curator
BMP4 (uncertain)	Cranio-facial morphology	Unknown, Unknown	Maylandia zebra zebra mbuna - (species)	Interspecific	Linkage Mapping	Albertson RC; Streelman JT; Kocher TD ; et al. (2005) Integration and evolution of the cichlid mandible: the molecular basis of alternate feeding strategi[...] 2 Additional References Albertson RC; Streelman JT; Kocher TD (2005) Integration and evolution of the cichlid mandible: the molecular basis of alternate feeding strategi[...] Albertson RC; Kocher TD (2006) Genetic and developmental basis of cichlid trophic diversity.	GP00000153	bmp4 O13107	Morphology	Not identified	Labeotropheus fuelleborni blue mbuna - (species)	Maylandia zebra zebra mbuna - (species)	BMP4 (uncertain)	Maylandia zebra zebra mbuna - (species)	Published - Accepted by Curator
Brassinosteroid-deficient dwarf1 (brd1)	Plant size (height)	Unknown, Unknown	Zea mays (species)	Intraspecific	Linkage Mapping	Peiffer JA; Romay MC; Gore MA ; et al. (2014) The genetic architecture of maize height.	GP00001628	ZEAMMB73_Zm00001d033180 A0A1D6KWT1	Morphology	On chromosome 1 two C>T transitions reduce plant height in 18RIL families	Zea mays (species)	Zea mays (species)	Brassinosteroid-deficient dwarf1 (brd1)	Zea mays (species)	Published - Accepted by Curator
brittle endosperm2 (Bt2) = endosperm ADP-glucose pyrophosphorylase small subunit	Sweet and brittle seed	Unknown, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Preiss J; Danner S; Summers PS ; et al. (1990) Molecular Characterization of the Brittle-2 Gene Effect on Maize Endosperm ADPglucose Pyrophosphoryl[...]	GP00000158	bt2 Q84J79	Physiology	Not identified	Zea mays (species)	Zea mays (species)	brittle endosperm2 (Bt2) = endosperm ADP-glucose pyrophosphorylase small subunit	Zea mays (species)	Published - Accepted by Curator
Brix9-2-5/LIN5 invertase	Fruit sugar content	Unknown, Unknown	Solanum lycopersicum tomato - (species) D	Domesticated	Linkage Mapping	Fridman E; Carrari F; Liu YS ; et al. (2004) Zooming in on a quantitative trait for tomato yield using interspecific introgressions.	GP00000159	LIN5 P93199	Physiology	Not identified	Solanum pennellii (species)	Solanum lycopersicum tomato - (species) D	Brix9-2-5/LIN5 invertase	Solanum lycopersicum tomato - (species)	Published - Accepted by Curator
calmodulin binding hydrolase	Xenobiotic resistance (soil contamination; serpentine)	Unknown, Unknown	Arabidopsis arenosa (species) D	Intraspecific	Association Mapping	Arnold BJ; Lahner B; DaCosta JM ; et al. (2016) Borrowed alleles and convergence in serpentine adaptation.	GP00001438	Q9FHQ0	Physiology	unknown	Arabidopsis arenosa (species)	Arabidopsis arenosa (species) D	calmodulin binding hydrolase	Arabidopsis arenosa (species)	Published - Accepted by Curator
Camta3	Plant size (height)	Unknown, Unknown	Zea mays (species)	Intraspecific	Association Mapping	Peiffer JA; Romay MC; Gore MA ; et al. (2014) The genetic architecture of maize height.	GP00001629	CAMTA3 Q8GSA7	Morphology	C>T transition on chromosome 3	Zea mays (species)	Zea mays (species)	Camta3	Zea mays (species)	Published - Accepted by Curator
Casparian strip membrane domain protein 1	Xenobiotic resistance (soil contamination; serpentine)	Unknown, Unknown	Arabidopsis arenosa (species) D	Intraspecific	Association Mapping	Arnold BJ; Lahner B; DaCosta JM ; et al. (2016) Borrowed alleles and convergence in serpentine adaptation.	GP00001432	CASP1 Q9SIH4	Physiology	five aa sustitutions	Arabidopsis arenosa (species)	Arabidopsis arenosa (species) D	Casparian strip membrane domain protein 1	Arabidopsis arenosa (species)	Published - Accepted by Curator
CBF gene cluster	Temperature tolerance (cold)	Unknown, Unknown	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Gery C; Zuther E; Schulz E ; et al. (2011) Natural variation in the freezing tolerance of Arabidopsis thaliana: effects of RNAi-induced CBF dep[...]	GP00000174	B1NSN2	Physiology	unknown	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	CBF gene cluster	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
ccdc170	Coloration	Unknown, Unknown	Anolis sagrei Brown anole - (species)	Intraspecific	Association Mapping	Feiner N; Brun-Usan M; Andrade P ; et al. (2022) A single locus regulates a female-limited color pattern polymorphism in a reptile.	GP00002363	Ccdc170 D3YXL0	Morphology		Anolis sagrei Brown anole - (species)	Anolis sagrei Brown anole - (species)	ccdc170	Anolis sagrei Brown anole - (species)	Published - Accepted by Curator
CEP55	Recombination rate (female)	Unknown, Unknown	Bos taurus cattle - (species)	Domesticated	Association Mapping	Ma L; O'Connell JR; VanRaden PM ; et al. (2015) Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis.	GP00001667	CEP55 E1B8M0	Physiology	Associated SNP located near the gene	Bos taurus cattle - (species)	Bos taurus cattle - (species)	CEP55	Bos taurus cattle - (species)	Published - Accepted by Curator
CG8492	Pathogen resistance (Drosophila C virus & flock house virus)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species) D	Experimental Evolution	Association Mapping	Martins NE; Faria VG; Nolte V ; et al. (2014) Host adaptation to viruses relies on few genes with different cross-resistance properties.	GP00001481	Dmel\CG8492 Q9VSA5	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species) D	CG8492	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
Chalcone synthase D (CHS-D)	Coloration (flower)	Unknown, Insertion	Ipomoea purpurea common morning-glory - (species) D	Intraspecific	Candidate Gene	Habu Y; Hisatomi Y; Iida S (1998) Molecular characterization of the mutable flaked allele for flower variegation in the common morning[...]	GP00001459	CHSD O22045	Morphology	insertion of a 3.9kb long transposable element Tip100 in intron	Ipomoea purpurea common morning-glory - (species)	Ipomoea purpurea common morning-glory - (species) D	Chalcone synthase D (CHS-D)	Ipomoea purpurea common morning-glory - (species)	Published - Accepted by Curator
Chalcone synthase D (CHS-D)	Coloration (flower)	Unknown, Insertion	Ipomoea purpurea common morning-glory - (species) D	Intraspecific	Candidate Gene	Habu Y; Hisatomi Y; Iida S (1998) Molecular characterization of the mutable flaked allele for flower variegation in the common morning[...]	GP00001460	CHSD O22045	Morphology	2 insertions of Tip100 in opposite orientation at different sites within the same intron	Ipomoea purpurea common morning-glory - (species)	Ipomoea purpurea common morning-glory - (species) D	Chalcone synthase D (CHS-D)	Ipomoea purpurea common morning-glory - (species)	Published - Accepted by Curator
CHRNA3/5 nicotine receptor cluster	Aging Smoking behavior	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Joshi PK; Fischer K; Schraut KE ; et al. (2016) Variants near CHRNA3/5 and APOE have age- and sex-related effects on human lifespan.	GP00000185	CHRNA3 P32297	Physiology Physiology	unknown; complex variation with SNP association signal	Homo sapiens human - (species)	Homo sapiens human - (species)	CHRNA3/5 nicotine receptor cluster	Homo sapiens human - (species)	Published - Accepted by Curator
CLH1	Xenobiotic resistance (fungicide: guazatine)	Unknown, Unknown	Arabidopsis thaliana thale cress - (species)	Intraspecific	Association Mapping	Atanasov KE; Barboza-Barquero L; Tiburcio AF ; et al. (2016) Genome Wide Association Mapping for the Tolerance to the Polyamine Oxidase Inhibitor Guazatine in Ar[...]	GP00001234	CLH1 O22527	Physiology	unknown	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	CLH1	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
Clock	Circadian rhythm	Unknown, Unknown	Bombyx mori domestic silkworm - (species) D	Domesticated	Association Mapping	Xiang H; Liu X; Li M ; et al. (2018) The evolutionary road from wild moth to domestic silkworm. 1 Additional References Tong X; Han MJ; Lu K (2022) High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecologic[...]	GP00002409	Clk O61735	Physiology		Bombyx mori domestic silkworm - (species)	Bombyx mori domestic silkworm - (species) D	Clock	Bombyx mori domestic silkworm - (species)	Published - Accepted by Curator
cortex	Coloration (wing ; body)	Unknown, Unknown	Bombyx mori domestic silkworm - (species)	Domesticated	Linkage Mapping	Ito K; Katsuma S; Kuwazaki S ; et al. (2016) Mapping and recombination analysis of two moth colour mutations, Black moth and Wild wing spot, in t[...]	GP00002417	cort Q960N3	Morphology	Mapping to a 2-Mb-long region which contains the cortex gene.	Bombyx mori domestic silkworm - (species)	Bombyx mori domestic silkworm - (species)	cortex	Bombyx mori domestic silkworm - (species)	Published - Accepted by Curator
cortex	Coloration (wing)	Unknown, Unknown	Bombyx mori domestic silkworm - (species)	Domesticated	Linkage Mapping	Ito K; Katsuma S; Kuwazaki S ; et al. (2016) Mapping and recombination analysis of two moth colour mutations, Black moth and Wild wing spot, in t[...]	GP00002418	cort Q960N3	Morphology	Mapping to a 100-kb-long region which contains the cortex gene.	Bombyx mori domestic silkworm - (species)	Bombyx mori domestic silkworm - (species)	cortex	Bombyx mori domestic silkworm - (species)	Published - Accepted by Curator
cortex	Coloration (wing; mimicry)	Unknown, Unknown	Papilio clytia common mime swallowtail - (species)	Intraspecific	Association Mapping	VanKuren NW; Massardo D; Nallu S ; et al. (2019) Butterfly Mimicry Polymorphisms Highlight Phylogenetic Limits of Gene Reuse in the Evolution of Dive[...]	GP00002419	cort Q960N3	Morphology	Mapping to a 500-kb region that contains the cortex gene	Papilio clytia common mime swallowtail - (species)	Papilio clytia common mime swallowtail - (species)	cortex	Papilio clytia common mime swallowtail - (species)	Published - Accepted by Curator
CPLX1	Recombination rate	Unknown, Unknown	Bos taurus cattle - (species)	Domesticated	Association Mapping	Ma L; O'Connell JR; VanRaden PM ; et al. (2015) Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis.	GP00001659	CPLX1 Q0IIL7	Physiology	On chromosome 6. Associated SNP in the intron of the gene	Bos taurus cattle - (species)	Bos taurus cattle - (species)	CPLX1	Bos taurus cattle - (species)	Published - Accepted by Curator
Cryptochrome 2 (CRY2)	Circadian rhythm	Unknown, Unknown	Bombyx mori domestic silkworm - (species) D	Domesticated	Association Mapping	Xiang H; Liu X; Li M ; et al. (2018) The evolutionary road from wild moth to domestic silkworm. 1 Additional References Tong X; Han MJ; Lu K (2022) High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecologic[...]	GP00002408	cry O77059	Physiology		Bombyx mori domestic silkworm - (species)	Bombyx mori domestic silkworm - (species) D	Cryptochrome 2 (CRY2)	Bombyx mori domestic silkworm - (species)	Published - Accepted by Curator
CYP2J19	Coloration (feathers)	Unknown, Unknown	Serinus canaria common canary - (species)	Interspecific	Linkage Mapping	Lopes RJ; Johnson JD; Toomey MB ; et al. (2016) Genetic Basis for Red Coloration in Birds.	GP00000201	CYP2J2 P51589	Morphology	unknown	Spinus cucullatus red siskin - (species)	Serinus canaria common canary - (species)	CYP2J19	Serinus canaria common canary - (species)	Published - Accepted by Curator
Darkener of apricot (Doa)	Lifespan	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Association Mapping	Hoedjes KM; Kostic H; Keller L ; et al. (2022) Natural alleles at the Doa locus underpin evolutionary changes in Drosophila lifespan and fecundity.	GP00002662	Doa P49762	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	Darkener of apricot (Doa)	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
Dat	Coloration (puparium)	Unknown, Unknown	Drosophila virilis (species)	Interspecific	Linkage Mapping	Ahmed-Braimah YH; Sweigart AL (2015) A single gene causes an interspecific difference in pigmentation in Drosophila.	GP00001403	AANAT1 Q94521	Morphology	unknown	Drosophila americana (species)	Drosophila virilis (species)	Dat	Drosophila virilis (species)	Published - Accepted by Curator
DC-STAMP domain containing 2 (DCST2)	Body size	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	van der Valk RJ; Kreiner-Møller E; Kooijman MN ; et al. (2015) A novel common variant in DCST2 is associated with length in early life and height in adulthood.	GP00001509	DCST2 Q5T1A1	Morphology	SNP rs905938 C allele associated with an increase in birth length but probably not the causative mutation	Homo sapiens human - (species)	Homo sapiens human - (species)	DC-STAMP domain containing 2 (DCST2)	Homo sapiens human - (species)	Published - Accepted by Curator
DCAF17	Hair Length	Unknown, Unknown	Sus scrofa pig - (species) D	Domesticated	Association Mapping	Ai H; Fang X; Yang B ; et al. (2015) Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequen[...]	GP00001570	DCAF17 I3LQF0	Physiology		Sus scrofa pig - (species)	Sus scrofa pig - (species) D	DCAF17	Sus scrofa pig - (species)	Published - Accepted by Curator
Dihydrofolate reductase (pvdhfr)	Xenobiotic resistance (pyrimethamine)	Unknown, Unknown	Plasmodium vivax malaria parasite P. vivax - (species) D	Intraspecific	Association Mapping	Pearson RD; Amato R; Auburn S ; et al. (2016) Genomic analysis of local variation and recent evolution in Plasmodium vivax.	GP00001484	DHFR P00374	Physiology	unknown	Plasmodium vivax malaria parasite P. vivax - (species)	Plasmodium vivax malaria parasite P. vivax - (species) D	Dihydrofolate reductase (pvdhfr)	Plasmodium vivax malaria parasite P. vivax - (species)	Published - Accepted by Curator
Dihydropteroate synthase (pvdhps)	Xenobiotic resistance (sulfadoxine)	Unknown, Unknown	Plasmodium vivax malaria parasite P. vivax - (species)	Intraspecific	Association Mapping	Pearson RD; Amato R; Auburn S ; et al. (2016) Genomic analysis of local variation and recent evolution in Plasmodium vivax.	GP00001485	DHPS Q00LX9	Physiology	unknown	Plasmodium vivax malaria parasite P. vivax - (species)	Plasmodium vivax malaria parasite P. vivax - (species)	Dihydropteroate synthase (pvdhps)	Plasmodium vivax malaria parasite P. vivax - (species)	Published - Accepted by Curator
Dopa oxidase-3 (Dox-3)	Enzymatic activity	Unknown, Unknown	Drosophila melanogaster fruit fly - (species) D	Intraspecific	Candidate Gene	Asada N (1997) Genetic variants affecting phenoloxidase activity in Drosophila melanogaster.	GP00002000		Physiology	Exact causing mutation(s) unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species) D	Dopa oxidase-3 (Dox-3)	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
Dopa-decarboxylase	Lifespan	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Linkage Mapping	De Luca M; Roshina NV; Geiger-Thornsberry GL ; et al. (2003) Dopa decarboxylase (Ddc) affects variation in Drosophila longevity.	GP00000233	Ddc P05031	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	Dopa-decarboxylase	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
Dopamine N-acetyltransferase (Dat)	Coloration (puparium)	Unknown, Unknown	Drosophila virilis (species) D	Interspecific	Linkage Mapping	Ahmed-Braimah YH; Sweigart AL (2015) A single gene causes an interspecific difference in pigmentation in Drosophila.	GP00000234	AANAT1 Q94521	Morphology	Not identified ; 11kb mapped interval including regulatory region and first exon	Drosophila americana (species)	Drosophila virilis (species) D	Dopamine N-acetyltransferase (Dat)	Drosophila virilis (species)	Published - Accepted by Curator
Doublesex	Coloration (wing ; Batesian mimicry)	Unknown, Unknown	Papilio polytes common Mormon - (species)	Intraspecific	Linkage Mapping	Kunte K; Zhang W; Tenger-Trolander A ; et al. (2014) doublesex is a mimicry supergene. 2 Additional References Nishikawa H; Iijima T; Kajitani R (2015) A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly. Zhang W; Westerman E; Nitzany E (2017) Tracing the origin and evolution of supergene mimicry in butterflies.	GP00001966	dsx P23023	Morphology	More than 1000 nucleotide substitutions differentiate mimetic and non-mimetic dsx alleles. The non-mimetic Cyrus Dsx protein folds much like other insects (such as Bombyx mori) whereas the mimetic polytes protein structure is highly divergent. Knockdown experiments show that female-specific dsx isoforms expressed from the inverted H allele (dsx(H)) induce mimetic coloration patterns and simultaneously repress non-mimetic patterns.	Papilio polytes common Mormon - (species)	Papilio polytes common Mormon - (species)	Doublesex	Papilio polytes common Mormon - (species)	Published - Accepted by Curator
Doublesex	Coloration (wing ; Batesian mimicry)	Unknown, Unknown	Papilio memnon (species)	Intraspecific	Candidate Gene	Iijima T; Kajitani R; Komata S ; et al. (2018) Parallel evolution of Batesian mimicry supergene in two Papilio butterflies, P. polytes and P. memno[...] 1 Additional References Komata S; Lin CP; Iijima T (2016) Identification of doublesex alleles associated with the female-limited Batesian mimicry polymorphism[...]	GP00001967	dsx P23023	Morphology	A locus containing three genes (dsx; Nach-like and UXT) displays dimorphic sequences strictly associated with the mimetic/nonmimetic phenotypes. Expression of dox; UXT but not Nach-like showed differences correlated with phenotype in female hind wings.	Papilio memnon (species)	Papilio memnon (species)	Doublesex	Papilio memnon (species)	Published - Accepted by Curator
ds1	Pathogen resistance	Unknown, Unknown	Sorghum bicolor sorghum - (species)	Domesticated	Linkage Mapping	Kawahigashi H; Kasuga S; Ando T ; et al. (2011) Positional cloning of ds1, the target leaf spot resistance gene against Bipolaris sorghicola in sorg[...]	GP00000238	ds1 K0IXC4	Physiology	unknown	Sorghum bicolor sorghum - (species)	Sorghum bicolor sorghum - (species)	ds1	Sorghum bicolor sorghum - (species)	Published - Accepted by Curator
DYM	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Lettre G (2011) Recent progress in the study of the genetics of height.	GP00000242	DYM Q7RTS9	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	DYM	Homo sapiens human - (species)	Published - Accepted by Curator
EARLY FLOWERING 3/Hd17	Flowering time	Unknown, Unknown	Oryza sativa rice - (species)	Domesticated	Linkage Mapping	Matsubara K; Ogiso-Tanaka E; Hori K ; et al. (2012) Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flow[...]	GP00000247	ELF3 O82804	Physiology	unknown	Oryza sativa rice - (species)	Oryza sativa rice - (species)	EARLY FLOWERING 3/Hd17	Oryza sativa rice - (species)	Published - Accepted by Curator
early responsive to dehydration stress protein 4	Xenobiotic resistance (soil contamination; serpentine)	Unknown, Unknown	Arabidopsis arenosa (species) D	Intraspecific	Association Mapping	Arnold BJ; Lahner B; DaCosta JM ; et al. (2016) Borrowed alleles and convergence in serpentine adaptation.	GP00001434	ERD4 Q9C8G5	Physiology	unknown	Arabidopsis arenosa (species)	Arabidopsis arenosa (species) D	early responsive to dehydration stress protein 4	Arabidopsis arenosa (species)	Published - Accepted by Curator
EBF1	Body fat distribution (pericardial)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Chu AY; Deng X; Fisher VA ; et al. (2017) Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyt[...]	GP00001554	EBF1 Q9UH73	Physiology	A>G & T>G in 2 associated SNPs	Homo sapiens human - (species)	Homo sapiens human - (species)	EBF1	Homo sapiens human - (species)	Published - Accepted by Curator
ebony	Coloration (male-specific)	Unknown, Unknown	Drosophila merina (species)	Interspecific	Linkage Mapping	Signor SA; Liu Y; Rebeiz M ; et al. (2016) Genetic Convergence in the Evolution of Male-Specific Color Patterns in Drosophila.	GP00001546	e O76858	Morphology	unknown	Drosophila ercepeae (species)	Drosophila merina (species)	ebony	Drosophila merina (species)	Published - Accepted by Curator
ebony	Coloration (male-specific)	Unknown, Unknown	Drosophila bipectinata (species)	Interspecific	Linkage Mapping	Signor SA; Liu Y; Rebeiz M ; et al. (2016) Genetic Convergence in the Evolution of Male-Specific Color Patterns in Drosophila.	GP00001547	e O76858	Morphology	unknown	Drosophila parabipectinata (species)	Drosophila bipectinata (species)	ebony	Drosophila bipectinata (species)	Published - Accepted by Curator
EDN3	Coloration (coat) Coloration (eyes) Hearing (loss)	Unknown, Unknown	Lama glama llama - (species) D Vicugna pacos alpaca - (species) D	Domesticated	Candidate Gene	Fan R; Gu Z; Guang X ; et al. (2020) Genomic analysis of the domestication and post-Spanish conquest evolution of the llama and alpaca.	GP00002182	EDN3 P14138	Morphology Morphology Physiology	Introgression from alpacas to lamas and clear correlation wit phenotype but no information on the mutation(s)	Vicugna vicugna vicugna - (species)	Lama glama llama - (species) D Vicugna pacos alpaca - (species) D	EDN3	Lama glama llama - (species) Vicugna pacos alpaca - (species)	Published - Accepted by Curator
EGFR	Wing shape (length)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Linkage Mapping	Dworkin I; Palsson A; Gibson G (2005) Replication of an Egfr-wing shape association in a wild-caught cohort of Drosophila melanogaster. 1 Additional References Palsson A; Dodgson J; Dworkin I (2005) Tests for the replication of an association between Egfr and natural variation in Drosophila melanog[...]	GP00000259	Egfr P04412	Morphology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	EGFR	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
EGFR	Coloration (skin)	Unknown, Unknown	Homo sapiens human - (species) D	Intraspecific	Association Mapping	Quillen EE; Bauchet M; Bigham AW ; et al. (2012) OPRM1 and EGFR contribute to skin pigmentation differences between Indigenous Americans and European[...]	GP00001537	EGFR P00533	Morphology	A>T associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species) D	EGFR	Homo sapiens human - (species)	Published - Accepted by Curator
egl-4 (Ppa-egl-4)	Insect pheromone attraction	Unknown, Unknown	Pristionchus pacificus (species)	Intraspecific	Association Mapping	Hong RL; Witte H; Sommer RJ (2008) Natural variation in Pristionchus pacificus insect pheromone attraction involves the protein kinase [...]	GP00000260	egl-4 O76360	Behavior	unknown	Pristionchus pacificus (species)	Pristionchus pacificus (species)	egl-4 (Ppa-egl-4)	Pristionchus pacificus (species)	Published - Accepted by Curator
EGLN1	Hypoxia response	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Bigham A; Bauchet M; Pinto D ; et al. (2010) Identifying signatures of natural selection in Tibetan and Andean populations using dense genome sca[...]	GP00000262	EGLN1 Q9GZT9	Physiology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	EGLN1	Homo sapiens human - (species)	Published - Accepted by Curator
EGLN1	High-altitude adaptation Hypoxia response	Unknown, Unknown	Anas flavirostris Yellow-billed teal - (species) D	Intraspecific	Candidate Gene	Graham AM; McCracken KG (2019) Convergent evolution on the hypoxia-inducible factor (HIF) pathway genes EGLN1 and EPAS1 in high-alt[...]	GP00002135	EGLN1 Q9GZT9	Physiology Physiology	probably cis-regulatory because no nonsynonymous mutations in the coding exon with high Fst	Anas flavirostris Yellow-billed teal - (species)	Anas flavirostris Yellow-billed teal - (species) D	EGLN1	Anas flavirostris Yellow-billed teal - (species)	Published - Accepted by Curator
EGLN1	High-altitude adaptation Hypoxia response	Unknown, Unknown	Anas georgica yellow-billed pintail - (species) D	Intraspecific	Candidate Gene	Graham AM; McCracken KG (2019) Convergent evolution on the hypoxia-inducible factor (HIF) pathway genes EGLN1 and EPAS1 in high-alt[...]	GP00002136	EGLN1 Q9GZT9	Physiology Physiology	probably cis-regulatory because no nonsynonymous mutations in the coding exon with high Fst	Anas georgica yellow-billed pintail - (species)	Anas georgica yellow-billed pintail - (species) D	EGLN1	Anas georgica yellow-billed pintail - (species)	Published - Accepted by Curator
EIF2AK3	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Lettre G (2011) Recent progress in the study of the genetics of height.	GP00000264	EIF2AK3 Q9NZJ5	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	EIF2AK3	Homo sapiens human - (species)	Published - Accepted by Curator
EIF2S2	Coloration (skin)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Liu F; Visser M; Duffy DL ; et al. (2015) Genetics of skin color variation in Europeans: genome-wide association studies with functional follo[...]	GP00001359	EIF2S2 P20042	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	EIF2S2	Homo sapiens human - (species)	Published - Accepted by Curator
ENSA	Body fat distribution (pericardial)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Chu AY; Deng X; Fisher VA ; et al. (2017) Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyt[...]	GP00001558	ENSA O43768	Physiology	A>G in associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	ENSA	Homo sapiens human - (species)	Published - Accepted by Curator
EPAS1	Hypoxia response	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Simonson TS; Yang Y; Huff CD ; et al. (2010) Genetic evidence for high-altitude adaptation in Tibet. 1 Additional References Xu S; Li S; Yang Y (2011) A genome-wide search for signals of high-altitude adaptation in Tibetans.	GP00000274	EPAS1 Q99814	Physiology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	EPAS1	Homo sapiens human - (species)	Published - Accepted by Curator
EPAS1	High-altitude adaptation Hypoxia response	Unknown, Unknown	Anas cyanoptera cinnamon teal - (species) D	Intraspecific	Candidate Gene	Graham AM; McCracken KG (2019) Convergent evolution on the hypoxia-inducible factor (HIF) pathway genes EGLN1 and EPAS1 in high-alt[...]	GP00002131	EPAS1 Q99814	Physiology Physiology	several candidate coding mutations	Anas cyanoptera cinnamon teal - (species)	Anas cyanoptera cinnamon teal - (species) D	EPAS1	Anas cyanoptera cinnamon teal - (species)	Published - Accepted by Curator
EPAS1	High-altitude adaptation Hypoxia response	Unknown, Unknown	Anas flavirostris Yellow-billed teal - (species) D	Intraspecific	Candidate Gene	Graham AM; McCracken KG (2019) Convergent evolution on the hypoxia-inducible factor (HIF) pathway genes EGLN1 and EPAS1 in high-alt[...]	GP00002132	EPAS1 Q99814	Physiology Physiology	several candidate coding mutations	Anas flavirostris Yellow-billed teal - (species)	Anas flavirostris Yellow-billed teal - (species) D	EPAS1	Anas flavirostris Yellow-billed teal - (species)	Published - Accepted by Curator
EPAS1	High-altitude adaptation Hypoxia response	Unknown, Unknown	Anas georgica yellow-billed pintail - (species) D	Intraspecific	Candidate Gene	Graham AM; McCracken KG (2019) Convergent evolution on the hypoxia-inducible factor (HIF) pathway genes EGLN1 and EPAS1 in high-alt[...]	GP00002133	EPAS1 Q99814	Physiology Physiology	several candidate coding mutations	Anas georgica yellow-billed pintail - (species)	Anas georgica yellow-billed pintail - (species) D	EPAS1	Anas georgica yellow-billed pintail - (species)	Published - Accepted by Curator
ephrin-a4	Coloration (scales)	Unknown, Unknown	Tropheops sp. 'red cheek' (species)	Interspecific	Linkage Mapping	Albertson RC; Powder KE; Hu Y ; et al. (2014) Genetic basis of continuous variation in the levels and modular inheritance of pigmentation in cichl[...]	GP00001420	EFNA4 P52798	Morphology	unknown	Labeotropheus fuelleborni blue mbuna - (species)	Tropheops sp. 'red cheek' (species)	ephrin-a4	Tropheops sp. 'red cheek' (species)	Published - Accepted by Curator
ERECTA	Plant architecture Leaf architecture Transpiration	Unknown, Unknown	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Masle J; Gilmore SR; Farquhar GD (2005) The ERECTA gene regulates plant transpiration efficiency in Arabidopsis. 2 Additional References El-Lithy ME; Reymond M; Stich B (2010) Relation among plant growth, carbohydrates and flowering time in the Arabidopsis Landsberg erecta x [...] Huang X; Paulo MJ; Boer M (2011) Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line pop[...]	GP00000280	ERECTA Q42371	Morphology Morphology Physiology	unknown	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	ERECTA	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
ERECTA	Pathogen resistance (Cucumerina fungus)	Unknown, Unknown	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Llorente F; Alonso-Blanco C; Sánchez-Rodriguez C ; et al. (2005) ERECTA receptor-like kinase and heterotrimeric G protein from Arabidopsis are required for resistanc[...]	GP00001244	ERECTA Q42371	Physiology	unknown	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	ERECTA	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
F2RL2	Hematopoiesis (mean blood platelet volume)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Guo MH; Nandakumar SK; Ulirsch JC ; et al. (2017) Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mech[...]	GP00001617	F2RL2 O00254	Physiology	A>T at the associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	F2RL2	Homo sapiens human - (species)	Published - Accepted by Curator
Fas2	Pupation site choice	Unknown, Unknown	Drosophila simulans (species)	Interspecific	Linkage Mapping	Pischedda A; Shahandeh MP; Turner TL (2020) The Loci of Behavioral Evolution: Evidence That Fas2 and tilB Underlie Differences in Pupation Site [...]	GP00002345	Fas2 P34082	Behavior	Gene identified via deficiency mapping. RNAi in D. melanogaster leads to pupae pupating closer to the food.	Drosophila melanogaster fruit fly - (species)	Drosophila simulans (species)	Fas2	Drosophila simulans (species)	Published - Accepted by Curator
FASCIATED EAR2	Grain yield (kernel row number)	Unknown, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Bommert P; Nagasawa NS; Jackson D (2013) Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus.	GP00000306	FEA2 Q940E8	Morphology	Not identified	Zea mays (species)	Zea mays (species)	FASCIATED EAR2	Zea mays (species)	Published - Accepted by Curator
fatty acyl-CoA reductase FAR2-B	Pheromone production (cuticular hydrocarbons)	Unknown, Unknown	Drosophila serrata (species)	Intraspecific	Linkage Mapping	Rusuwa BB; Chung H; Allen SL ; et al. (2022) Natural variation at a single gene generates sexual antagonism across fitness components in Drosophi[...]	GP00002395	Dmel\CG17560 Q9VES6	Physiology	Both alleles of DsFAR2-B appear to be functional. The distinction between the two alleles iss a large number of non-synonymous substitutions.	Drosophila serrata (species)	Drosophila serrata (species)	fatty acyl-CoA reductase FAR2-B	Drosophila serrata (species)	Published - Accepted by Curator
Ferroportin 2	Xenobiotic resistance (soil contamination; serpentine)	Unknown, Unknown	Arabidopsis arenosa (species) D	Intraspecific	Association Mapping	Arnold BJ; Lahner B; DaCosta JM ; et al. (2016) Borrowed alleles and convergence in serpentine adaptation.	GP00001437	IREG2 F4KGN5	Physiology	unknown	Arabidopsis arenosa (species)	Arabidopsis arenosa (species) D	Ferroportin 2	Arabidopsis arenosa (species)	Published - Accepted by Curator
FGF4 retrogene	Limb size	Unknown, Insertion	Canis lupus familiaris dog - (subspecies) D	Domesticated	Association Mapping	Parker HG; VonHoldt BM; Quignon P ; et al. (2009) An expressed fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs.	GP00000309	FGF4 J9P3I7	Morphology	Gene retroposition : 5kb insertion containing a FGF4 retrogene; 25Mb away from the complete (original) FGF4 gene	Canis lupus gray wolf - (species)	Canis lupus familiaris dog - (subspecies) D	FGF4 retrogene	Canis lupus familiaris dog - (subspecies)	Published - Accepted by Curator
Fidgetin-like1 (Fignl1)	Testis size (testis weight ; spermatogenesis)	Unknown, Unknown	Mus musculus house mouse - (species)	Interspecific	Linkage Mapping	L'Hôte D; Vatin M; Auer J ; et al. (2011) Fidgetin-like1 is a strong candidate for a dynamic impairment of male meiosis leading to reduced tes[...]	GP00001668	Fignl1 Q8BPY9	Physiology	Several non-synonymous SNPs and an alternative splicing encoding a truncated isoform that may act as a competitor of the full length protein in the degradation process	Mus spretus western wild mouse - (species)	Mus musculus house mouse - (species)	Fidgetin-like1 (Fignl1)	Mus musculus house mouse - (species)	Published - Accepted by Curator
Flavonoid 3'-5'-hydroxylase (F3'5'H)	Plant secondary metabolite (catechin)	Unknown, Unknown	Camellia sinensis (species)	Intraspecific	Linkage Mapping	Jin JQ; Ma JQ; Yao MZ ; et al. (2017) Functional natural allelic variants of flavonoid 3',5'-hydroxylase gene governing catechin traits in[...]	GP00001620	F3'5'H1 A3KLR7	Physiology	several candidate SNPs	Camellia sinensis (species)	Camellia sinensis (species)	Flavonoid 3'-5'-hydroxylase (F3'5'H)	Camellia sinensis (species)	Published - Accepted by Curator
flavonoid 3'-hydroxylase (F3'H)	Coloration (flowers)	Unknown, Unknown	Petunia x hybrida (species)	Domesticated	Candidate Gene	Brugliera F; Barri-Rewell G; Holton TA ; et al. (1999) Isolation and characterization of a flavonoid 3'-hydroxylase cDNA clone corresponding to the Ht1 loc[...]	GP00000320	CYP75B1 Q9SD85	Morphology	Not identified	Petunia x hybrida (species)	Petunia x hybrida (species)	flavonoid 3'-hydroxylase (F3'H)	Petunia x hybrida (species)	Published - Accepted by Curator
FMN1	Recombination rate	Unknown, Unknown	Bos taurus cattle - (species)	Domesticated	Association Mapping	Ma L; O'Connell JR; VanRaden PM ; et al. (2015) Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis.	GP00001662	FMN1 Q68DA7	Physiology	On chromosome 10. Associated SNP located upstream of the gene	Bos taurus cattle - (species)	Bos taurus cattle - (species)	FMN1	Bos taurus cattle - (species)	Published - Accepted by Curator
foraging	Food-search behavior	Unknown, Unknown	Sesamia nonagrioides Mediterranean corn borer - (species)	Intraspecific	Candidate Gene	Chardonnet F; Capdevielle-Dulac C; Chouquet B ; et al. (2014) Food searching behaviour of a Lepidoptera pest species is modulated by the foraging gene polymorphis[...]	GP00002619	for Q03043	Behavior	Association between a coding SNP in foraging gene and foraging activity. But not clear whether the causal mutation is this one.	Sesamia nonagrioides Mediterranean corn borer - (species)	Sesamia nonagrioides Mediterranean corn borer - (species)	foraging	Sesamia nonagrioides Mediterranean corn borer - (species)	Published - Accepted by Curator
foxo	Body size (wing) Starvation resistance	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Candidate Gene	Betancourt NJ; Rajpurohit S; Durmaz E ; et al. (2021) Allelic polymorphism at foxo contributes to local adaptation in Drosophila melanogaster. 1 Additional References Durmaz E; Rajpurohit S; Betancourt N (2019) A clinal polymorphism in the insulin signaling transcription factor foxo contributes to life-history[...]	GP00002661	foxo Q95V55	Morphology Morphology; Physiology		Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	foxo	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
Frigida (BnaA.FRI.a)	Flowering time	Unknown, Unknown	Brassica napus rape - (species)	Domesticated	Linkage Mapping	Wang N; Qian W; Suppanz I ; et al. (2011) Flowering time variation in oilseed rape (Brassica napus L.) is associated with allelic variation in[...]	GP00000356	FRI P0DH90	Physiology	unknown	Brassica napus rape - (species)	Brassica napus rape - (species)	Frigida (BnaA.FRI.a)	Brassica napus rape - (species)	Published - Accepted by Curator
FTO	Body fat distribution (subcutaneous)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Chu AY; Deng X; Fisher VA ; et al. (2017) Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyt[...]	GP00001560	FTO Q9C0B1	Physiology	A>G in associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	FTO	Homo sapiens human - (species)	Published - Accepted by Curator
G protein-coupled receptor rhodopsin	Diapause	Unknown, Unknown	Daphnia magna (species)	Intraspecific	Linkage Mapping	Roulin AC; Bourgeois Y; Stiefel U ; et al. (2016) A Photoreceptor Contributes to the Natural Variation of Diapause Induction in Daphnia magna.	GP00001539	RHO P08100	Physiology	unknown	Daphnia magna (species)	Daphnia magna (species)	G protein-coupled receptor rhodopsin	Daphnia magna (species)	Published - Accepted by Curator
GCLM	Recombination rate	Unknown, Unknown	Bos taurus cattle - (species)	Domesticated	Association Mapping	Ma L; O'Connell JR; VanRaden PM ; et al. (2015) Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis.	GP00001664	GCLM Q2T9Y6	Physiology	On chromosome 3. Associated SNP upstream of the gene	Bos taurus cattle - (species)	Bos taurus cattle - (species)	GCLM	Bos taurus cattle - (species)	Published - Accepted by Curator
GDF5	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Sanna S; Jackson AU; Nagaraja R ; et al. (2008) Common variants in the GDF5-UQCC region are associated with variation in human height. 1 Additional References Lettre G (2011) Recent progress in the study of the genetics of height.	GP00000387	GDF5 P43026	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	GDF5	Homo sapiens human - (species)	Published - Accepted by Curator
gfzf	Hybrid incompatibility (F1 male lethality)	Unknown, Unknown	Drosophila simulans (species)	Interspecific	Linkage Mapping	Phadnis N; Baker EP; Cooper JC ; et al. (2015) An essential cell cycle regulation gene causes hybrid inviability in Drosophila.	GP00000392	gfzf Q6NP69	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila simulans (species)	gfzf	Drosophila simulans (species)	Published - Accepted by Curator
Ghd7	Flowering time Inflorescence morphology	Unknown, Unknown	Oryza sativa rice - (species)	Domesticated	Linkage Mapping	Xue W; Xing Y; Weng X ; et al. (2008) Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice.	GP00000393	GHD7 E5RQA1	Physiology Morphology	unknown	Oryza sativa rice - (species)	Oryza sativa rice - (species)	Ghd7	Oryza sativa rice - (species)	Published - Accepted by Curator
GHSR	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Lettre G (2011) Recent progress in the study of the genetics of height.	GP00000394	GHSR Q92847	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	GHSR	Homo sapiens human - (species)	Published - Accepted by Curator
GIBBERELLIC ACID REQUIRING 1 (GA1)	Flower morphology	Unknown, Unknown	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Brock MT; Kover PX; Weinig C (2012) Natural variation in GA1 associates with floral morphology in Arabidopsis thaliana.	GP00000395	GA1 Q38802	Morphology	unknown	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	GIBBERELLIC ACID REQUIRING 1 (GA1)	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
GLABROUS1	Trichome (leaves)	Unknown, Unknown	Arabidopsis (genus)	Intraspecific	Candidate Gene	Hauser MT; Harr B; Schlötterer C (2001) Trichome distribution in Arabidopsis thaliana and its close relative Arabidopsis lyrata: molecular a[...] 1 Additional References Kivimäki M; Kärkkäinen K; Gaudeul M (2007) Gene, phenotype and function: GLABROUS1 and resistance to herbivory in natural populations of Arabid[...]	GP00000398	GL1 P27900	Morphology	unknown	Arabidopsis (genus)	Arabidopsis (genus)	GLABROUS1	Arabidopsis (genus)	Published - Accepted by Curator
GLABROUS1	Trichome density (leaf)	Unknown, Unknown	Arabidopsis thaliana thale cress - (species)	Intraspecific	Association Mapping	Hauser MT; Harr B; Schlötterer C (2001) Trichome distribution in Arabidopsis thaliana and its close relative Arabidopsis lyrata: molecular a[...] 1 Additional References Hauser MT; Harr B; Schlötterer C (2001) Trichome distribution in Arabidopsis thaliana and its close relative Arabidopsis lyrata: molecular a[...]	GP00001242	GL1 P27900	Morphology	high frequency pattern of polymorphism identified in the third exon and 3' flank	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	GLABROUS1	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
glutamate dehydrogenase (GDH)	Silk yield	Unknown, Unknown	Bombyx mori domestic silkworm - (species) D	Domesticated	Association Mapping	Xiang H; Liu X; Li M ; et al. (2018) The evolutionary road from wild moth to domestic silkworm. 1 Additional References Tong X; Han MJ; Lu K (2022) High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecologic[...]	GP00002406	bb8 Q9VCN3	Physiology	Increased expression in the domesticated strains	Bombyx mori domestic silkworm - (species)	Bombyx mori domestic silkworm - (species) D	glutamate dehydrogenase (GDH)	Bombyx mori domestic silkworm - (species)	Published - Accepted by Curator
glutamate synthase (GOGAT)	Silk yield	Unknown, Unknown	Bombyx mori domestic silkworm - (species) D	Domesticated	Association Mapping	Xiang H; Liu X; Li M ; et al. (2018) The evolutionary road from wild moth to domestic silkworm. 1 Additional References Tong X; Han MJ; Lu K (2022) High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecologic[...]	GP00002407	GS M9NFH8	Physiology	Increased expression in the domesticated strains at the larval stage	Bombyx mori domestic silkworm - (species)	Bombyx mori domestic silkworm - (species) D	glutamate synthase (GOGAT)	Bombyx mori domestic silkworm - (species)	Published - Accepted by Curator
glutamine synthetase 2 (GS)	Silk yield	Unknown, Unknown	Bombyx mori domestic silkworm - (species) D	Domesticated	Association Mapping	Xiang H; Liu X; Li M ; et al. (2018) The evolutionary road from wild moth to domestic silkworm. 1 Additional References Tong X; Han MJ; Lu K (2022) High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecologic[...]	GP00002405	Gs2 P20478	Physiology		Bombyx mori domestic silkworm - (species)	Bombyx mori domestic silkworm - (species) D	glutamine synthetase 2 (GS)	Bombyx mori domestic silkworm - (species)	Published - Accepted by Curator
Glycophorin GYPA-GYPB-GYPE cluster	Pathogen resistance (Plasmodium; malaria parasite)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	; Band G; Rockett KA ; et al. (2015) A novel locus of resistance to severe malaria in a region of ancient balancing selection.	GP00000406	GYPA P02724	Physiology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	Glycophorin GYPA-GYPB-GYPE cluster	Homo sapiens human - (species)	Published - Accepted by Curator
GNBP1	Pathogen resistance	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Candidate Gene	Sackton TB; Lazzaro BP; Clark AG (2010) Genotype and gene expression associations with immune function in Drosophila.	GP00000408	GNBP1 Q9NHB0	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	GNBP1	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
GNBP2	Pathogen resistance	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Candidate Gene	Sackton TB; Lazzaro BP; Clark AG (2010) Genotype and gene expression associations with immune function in Drosophila.	GP00000409	GNBP2 Q9VVR4	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	GNBP2	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
GPR133	Body size (height; male-limited)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Tönjes A; Koriath M; Schleinitz D ; et al. (2009) Genetic variation in GPR133 is associated with height: genome wide association study in the self-con[...]	GP00000412	ADGRD1 Q6QNK2	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	GPR133	Homo sapiens human - (species)	Published - Accepted by Curator
GRAMD3	Body fat distribution (visceral)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Chu AY; Deng X; Fisher VA ; et al. (2017) Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyt[...]	GP00001557	GRAMD2B Q96HH9	Physiology	A>C in associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	GRAMD3	Homo sapiens human - (species)	Published - Accepted by Curator
GSDMB	Body fat distribution (subcutaneous)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Chu AY; Deng X; Fisher VA ; et al. (2017) Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyt[...]	GP00001556	GSDMB Q8TAX9	Physiology	T>C in associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	GSDMB	Homo sapiens human - (species)	Published - Accepted by Curator
GSS (glutathione synthetase)	Coloration (skin)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Liu F; Visser M; Duffy DL ; et al. (2015) Genetics of skin color variation in Europeans: genome-wide association studies with functional follo[...]	GP00001362	GSS P48637	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	GSS (glutathione synthetase)	Homo sapiens human - (species)	Published - Accepted by Curator
GSTE1-E10 cluster	Xenobiotic resistance (drug)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Linkage Mapping	Kislukhin G; King EG; Walters KN ; et al. (2013) The genetic architecture of methotrexate toxicity is similar in Drosophila melanogaster and humans.	GP00000419	GstE1 Q7KK90	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	GSTE1-E10 cluster	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
HAC1 (=ATQ1)	Xenobiotic resistance (soil contamination; arsenate)	Unknown, Complex Change	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Sánchez-Bermejo E; Castrillo G; del Llano B ; et al. (2014) Natural variation in arsenate tolerance identifies an arsenate reductase in Arabidopsis thaliana. 1 Additional References Chao DY; Chen Y; Chen J (2014) Genome-wide association mapping identifies a new arsenate reductase enzyme critical for limiting ars[...]	GP00000434	HAC1 Q9C5X9	Physiology	Coding variation and differential gene expression in roots	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	HAC1 (=ATQ1)	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
hairy (h)	Bristle number (thorax)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Linkage Mapping	Robin C; Lyman RF; Long AD ; et al. (2002) hairy: A quantitative trait locus for drosophila sensory bristle number.	GP00000436	h P14003	Morphology	unknown; complex promoter indel variation shows high-association	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	hairy (h)	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
HBS1L-MYB	Hematopoiesis (blood platelet count)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Guo MH; Nandakumar SK; Ulirsch JC ; et al. (2017) Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mech[...]	GP00001614	HBS1L Q9Y450	Physiology	T>C at the associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	HBS1L-MYB	Homo sapiens human - (species)	Published - Accepted by Curator
heavy metal atpase4 (HMA4)	Metal tolerance	Unknown, Unknown	Arabidopsis halleri (species) D	Interspecific	Linkage Mapping	Courbot M; Willems G; Motte P ; et al. (2007) A major quantitative trait locus for cadmium tolerance in Arabidopsis halleri colocalizes with HMA4,[...]	GP00000447	HMA4 O64474	Physiology	unknown	Arabidopsis lyrata (species)	Arabidopsis halleri (species) D	heavy metal atpase4 (HMA4)	Arabidopsis halleri (species)	Published - Accepted by Curator
high expression of osmotically responsive genes 2	Xenobiotic resistance (soil contamination; serpentine)	Unknown, Unknown	Arabidopsis arenosa (species) D	Intraspecific	Association Mapping	Arnold BJ; Lahner B; DaCosta JM ; et al. (2016) Borrowed alleles and convergence in serpentine adaptation.	GP00001435	SAL1 Q42546	Physiology	unknown	Arabidopsis arenosa (species)	Arabidopsis arenosa (species) D	high expression of osmotically responsive genes 2	Arabidopsis arenosa (species)	Published - Accepted by Curator
HLA-DRB1	Pathogen resistance (typhoid fever)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Dunstan SJ; Hue NT; Han B ; et al. (2014) Variation at HLA-DRB1 is associated with resistance to enteric fever.	GP00000479	HLA-DRB1 Q30167	Physiology	uncharacterized	Homo sapiens human - (species)	Homo sapiens human - (species)	HLA-DRB1	Homo sapiens human - (species)	Published - Accepted by Curator
HM1 = HC toxin reductase (HCTR)	Pathogen resistance	Unknown, Unknown	Zea mays (species)	Domesticated	Candidate Gene	Multani DS; Meeley RB; Paterson AH ; et al. (1998) Plant-pathogen microevolution: molecular basis for the origin of a fungal disease in maize.	GP00000480	hm1 O49163	Physiology	Not identified	Zea mays (species)	Zea mays (species)	HM1 = HC toxin reductase (HCTR)	Zea mays (species)	Published - Accepted by Curator
HMGA2	Body size	Unknown, Unknown	Canis lupus familiaris dog - (subspecies) D	Domesticated	Association Mapping	Akey JM; Ruhe AL; Akey DT ; et al. (2010) Tracking footprints of artificial selection in the dog genome. 1 Additional References Webster MT; Kamgari N; Perloski M (2015) Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds.	GP00000484	HMGA2 P52926	Morphology	unknown	Canis lupus gray wolf - (species)	Canis lupus familiaris dog - (subspecies) D	HMGA2	Canis lupus familiaris dog - (subspecies)	Published - Accepted by Curator
HMGA2	Body size	Unknown, Unknown	Equus caballus horse - (species)	Domesticated	Association Mapping	Makvandi-Nejad S; Hoffman GE; Allen JJ ; et al. (2012) Four loci explain 83% of size variation in the horse.	GP00000485	HMGA2 P52926	Morphology	unknown	Equus caballus horse - (species)	Equus caballus horse - (species)	HMGA2	Equus caballus horse - (species)	Published - Accepted by Curator
HMGA2	Body size (height; bone mineral density)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Weedon MN; Lettre G; Freathy RM ; et al. (2007) A common variant of HMGA2 is associated with adult and childhood height in the general population. 3 Additional References Yang TL; Guo Y; Zhang LS (2010) HMGA2 is confirmed to be associated with human adult height. Kuipers A; Zhang Y; Cauley JA (2009) Association of a high mobility group gene (HMGA2) variant with bone mineral density. Horikoshi M; Yaghootkar H; Mook-Kanamori DO (2013) New loci associated with birth weight identify genetic links between intrauterine growth[...]	GP00000486	HMGA2 P52926	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	HMGA2	Homo sapiens human - (species)	Published - Accepted by Curator
HMGA2	Ear size	Unknown, Unknown	Sus scrofa domesticus domestic pig - (subspecies)	Domesticated	Linkage Mapping	Li P; Xiao S; Wei N ; et al. (2012) Fine mapping of a QTL for ear size on porcine chromosome 5 and identification of high mobility group[...]	GP00000487	HMGA2 P52926	Morphology	unknown	Sus scrofa pig - (species)	Sus scrofa domesticus domestic pig - (subspecies)	HMGA2	Sus scrofa domesticus domestic pig - (subspecies)	Published - Accepted by Curator
HSP90	Developmental time	Unknown, Insertion	Locusta migratoria migratory locust - (species) D	Intraspecific	Candidate Gene	Chen B; Zhang B; Xu L ; et al. (2017) Transposable Element-Mediated Balancing Selection at Hsp90 Underlies Embryo Developmental Variation.	GP00002437	daf-21 Q18688	Physiology	an Lm1 SINE insertion in the third exon of the Hsp90 gene produces an alternative splicing form associated with faster development and higher developmental synchrony. Found by scanning Lm1 insertions in natural locust populations.	Locusta migratoria migratory locust - (species)	Locusta migratoria migratory locust - (species) D	HSP90	Locusta migratoria migratory locust - (species)	Published - Accepted by Curator
HTR2C serotonin receptor	Immune response (complement activation)	Unknown, Unknown	Gallus gallus chicken - (species)	Domesticated	Association Mapping	Biscarini F; Bovenhuis H; van Arendonk JA ; et al. (2010) Across-line SNP association study of innate and adaptive immune response in laying hens.	GP00001595	HTR2C F1N989	Physiology	unknown	Gallus gallus chicken - (species)	Gallus gallus chicken - (species)	HTR2C serotonin receptor	Gallus gallus chicken - (species)	Published - Accepted by Curator
HTR3A serotonin receptor	Immune response (antibody titre)	Unknown, Unknown	Gallus gallus chicken - (species)	Domesticated	Association Mapping	Biscarini F; Bovenhuis H; van Arendonk JA ; et al. (2010) Across-line SNP association study of innate and adaptive immune response in laying hens.	GP00001596	HTR3A A0A1D5P8L2	Physiology	unknown	Gallus gallus chicken - (species)	Gallus gallus chicken - (species)	HTR3A serotonin receptor	Gallus gallus chicken - (species)	Published - Accepted by Curator
Hybrid male rescue	Hybrid incompatibility (F1 male lethality)	Unknown, Unknown	Drosophila simulans (species)	Interspecific	Linkage Mapping	Brideau NJ; Flores HA; Wang J ; et al. (2006) Two Dobzhansky-Muller genes interact to cause hybrid lethality in Drosophila.	GP00000495	Hmr Q86CW5	Physiology	Rapid coding divergence	Drosophila melanogaster fruit fly - (species)	Drosophila simulans (species)	Hybrid male rescue	Drosophila simulans (species)	Published - Accepted by Curator
I cluster	Pathogen resistance	Unknown, Unknown	Phaseolus vulgaris (species) D	Domesticated	Linkage Mapping	Vallejos CE; Astua-Monge G; Jones V ; et al. (2006) Genetic and molecular characterization of the I locus of Phaseolus vulgaris.	GP00000496	U5YMY7	Physiology	unknown; maps to a cluster of R-proteins	Phaseolus vulgaris (species)	Phaseolus vulgaris (species) D	I cluster	Phaseolus vulgaris (species)	Published - Accepted by Curator
I Kappa B Kinase Interacting Protein (IKBIP)	Lifespan	Unknown, Unknown	Nothobranchius furzeri turquoise killifish - (species)	Intraspecific	Association Mapping	Reichwald K; Petzold A; Koch P ; et al. (2015) Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish.	GP00001678	IKBIP Q70UQ0	Physiology	Under positive selection; down regulated in aging skin	Nothobranchius furzeri turquoise killifish - (species)	Nothobranchius furzeri turquoise killifish - (species)	I Kappa B Kinase Interacting Protein (IKBIP)	Nothobranchius furzeri turquoise killifish - (species)	Published - Accepted by Curator
IGK	Pathogen resistance	Unknown, Unknown	Gasterosteus aculeatus three-spined stickleback - (species)	Intraspecific	Association Mapping	Jones FC; Chan YF; Schmutz J ; et al. (2012) A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence i[...]	GP00001382	IGKV1-5 P01602	Physiology	unknown	Gasterosteus aculeatus three-spined stickleback - (species)	Gasterosteus aculeatus three-spined stickleback - (species)	IGK	Gasterosteus aculeatus three-spined stickleback - (species)	Published - Accepted by Curator
Inhibitor of DNA binding 3 (id3)	Lifespan	Unknown, Unknown	Nothobranchius furzeri turquoise killifish - (species) D	Intraspecific	Association Mapping	Reichwald K; Petzold A; Koch P ; et al. (2015) Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish.	GP00001676	ID3 Q02535	Physiology	Signature of selection for id3. upregulated during aging in brain and skin. A radical substitution of a non-polar by a charged aa (A>Q) followed by a 2-aa deletion in the C-terminus	Nothobranchius furzeri turquoise killifish - (species)	Nothobranchius furzeri turquoise killifish - (species) D	Inhibitor of DNA binding 3 (id3)	Nothobranchius furzeri turquoise killifish - (species)	Published - Accepted by Curator
InR	Fertility (ovariole number)	Unknown, Unknown	Drosophila simulans (species)	Interspecific	Linkage Mapping	Green DA; Extavour CG (2012) Convergent evolution of a reproductive trait through distinct developmental mechanisms in Drosophila[...] 1 Additional References Orgogozo V; Broman KW; Stern DL (2006) High-resolution quantitative trait locus mapping reveals sign epistasis controlling ovariole number [...]	GP00000500	InR P09208	Physiology	unknown; loss of function reduces ovariole number	Drosophila sechellia (species)	Drosophila simulans (species)	InR	Drosophila simulans (species)	Published - Accepted by Curator
Insulin-like growth factor receptor 1 (IGF1R)	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Lettre G (2011) Recent progress in the study of the genetics of height.	GP00000503	IGF1R P08069	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	Insulin-like growth factor receptor 1 (IGF1R)	Homo sapiens human - (species)	Published - Accepted by Curator
Interleukin 10 (IL10)	Immune response (antibody titre and complement activation)	Unknown, Unknown	Gallus gallus chicken - (species)	Domesticated	Association Mapping	Biscarini F; Bovenhuis H; van Arendonk JA ; et al. (2010) Across-line SNP association study of innate and adaptive immune response in laying hens.	GP00001597	IL10 Q6A2H4	Physiology	unknown	Gallus gallus chicken - (species)	Gallus gallus chicken - (species)	Interleukin 10 (IL10)	Gallus gallus chicken - (species)	Published - Accepted by Curator
Interleukin 12B (IL12B)	Immune response (antibody titre)	Unknown, Unknown	Gallus gallus chicken - (species)	Domesticated	Association Mapping	Biscarini F; Bovenhuis H; van Arendonk JA ; et al. (2010) Across-line SNP association study of innate and adaptive immune response in laying hens.	GP00001594	IL-12B Q6X0K9	Physiology	unknown	Gallus gallus chicken - (species)	Gallus gallus chicken - (species)	Interleukin 12B (IL12B)	Gallus gallus chicken - (species)	Published - Accepted by Curator
Interleukin 17A (IL17A)	Immune response (antibody titre and complement activation)	Unknown, Unknown	Gallus gallus chicken - (species)	Domesticated	Association Mapping	Biscarini F; Bovenhuis H; van Arendonk JA ; et al. (2010) Across-line SNP association study of innate and adaptive immune response in laying hens.	GP00001593	IL17A B4ER12	Physiology	unknown	Gallus gallus chicken - (species)	Gallus gallus chicken - (species)	Interleukin 17A (IL17A)	Gallus gallus chicken - (species)	Published - Accepted by Curator
JAK2	Hematopoiesis (blood platelet count)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Guo MH; Nandakumar SK; Ulirsch JC ; et al. (2017) Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mech[...]	GP00001613	JAK2 O60674	Physiology	G>A at the associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	JAK2	Homo sapiens human - (species)	Published - Accepted by Curator
JAZF1	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Johansson A; Marroni F; Hayward C ; et al. (2009) Common variants in the JAZF1 gene associated with height identified by linkage and genome-wide assoc[...] 1 Additional References Soranzo N; Rivadeneira F; Chinappen-Horsley U (2009) Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations wi[...]	GP00000507	JAZF1 Q86VZ6	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	JAZF1	Homo sapiens human - (species)	Published - Accepted by Curator
JMJD1C	Hematopoiesis (mean blood platelet volume)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Guo MH; Nandakumar SK; Ulirsch JC ; et al. (2017) Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mech[...]	GP00001606	JMJD1C Q15652	Physiology	T>A at the associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	JMJD1C	Homo sapiens human - (species)	Published - Accepted by Curator
JYalpha	Hybrid incompatibility (F2 male sterility)	Unknown, Unknown	Drosophila simulans (species)	Interspecific	Linkage Mapping	Masly JP; Jones CD; Noor MA ; et al. (2006) Gene transposition as a cause of hybrid sterility in Drosophila.	GP00000508	JYalpha A8QI34	Physiology	Gene transposition	Drosophila melanogaster fruit fly - (species)	Drosophila simulans (species)	JYalpha	Drosophila simulans (species)	Published - Accepted by Curator
K+ uptake permease 9	Xenobiotic resistance (soil contamination; serpentine)	Unknown, Unknown	Arabidopsis arenosa (species) D	Intraspecific	Association Mapping	Arnold BJ; Lahner B; DaCosta JM ; et al. (2016) Borrowed alleles and convergence in serpentine adaptation.	GP00001430	POT9 O49423	Physiology	unknown	Arabidopsis arenosa (species)	Arabidopsis arenosa (species) D	K+ uptake permease 9	Arabidopsis arenosa (species)	Published - Accepted by Curator
KCNH4 - uncertain	Freshwater adaptation	Unknown, Unknown	Gasterosteus aculeatus three-spined stickleback - (species) D	Intraspecific	Association Mapping	Jones FC; Grabherr MG; Chan YF ; et al. (2012) The genomic basis of adaptive evolution in threespine sticklebacks.	GP00000510	KCNH4 Q9UQ05	Physiology	Large Inversion resulting in alternative transcripts	Gasterosteus aculeatus three-spined stickleback - (species)	Gasterosteus aculeatus three-spined stickleback - (species) D	KCNH4 - uncertain	Gasterosteus aculeatus three-spined stickleback - (species)	Published - Accepted by Curator
Kcnj13	Coloration	Unknown, Unknown	Danio aesculapii (species) D	Interspecific	Candidate Gene	Podobnik M; Frohnhöfer HG; Dooley CM ; et al. (2020) Evolution of the potassium channel gene Kcnj13 underlies colour pattern diversification in Danio fis[...]	GP00002364	Kcnj13 P86046	Morphology		Danio rerio zebrafish - (species)	Danio aesculapii (species) D	Kcnj13	Danio aesculapii (species)	Published - Accepted by Curator
KCNQ1	Body size (height)	Unknown, Epigenetic Change	Homo sapiens human - (species)	Intraspecific	Association Mapping	Zoledziewska M; Sidore C; Chiang CWK ; et al. (2015) Height-reducing variants and selection for short stature in Sardinia.	GP00000511	KCNQ1 P51787	Morphology	unknown causative change in an imprinted region - consistent with maternal inheritance detected by the association	Homo sapiens human - (species)	Homo sapiens human - (species)	KCNQ1	Homo sapiens human - (species)	Published - Accepted by Curator
kin of irre (kire)	Xenobiotic resistance (methylmercury ; development)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Association Mapping	Montgomery SL; Vorojeikina D; Huang W ; et al. (2014) Genome-wide association analysis of tolerance to methylmercury toxicity in Drosophila implicates myo[...]	GP00001398	kirre Q9N9Y9	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	kin of irre (kire)	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
Kit (type III receptor protein-tyrosine kinase)	Coloration (coat)	Unknown, Unknown	Vulpes vulpes red fox - (species) D	Domesticated	Association Mapping	Kukekova AV; Johnson JL; Kharlamova AV ; et al. (2016) Georgian white coat color of red fox (Vulpes vulpes) maps to fox chromosome 2 in the region containi[...]	GP00001328	Kit P05532	Morphology	unknown	Vulpes vulpes red fox - (species)	Vulpes vulpes red fox - (species) D	Kit (type III receptor protein-tyrosine kinase)	Vulpes vulpes red fox - (species)	Published - Accepted by Curator
Kit (type III receptor protein-tyrosine kinase) [pseudoreplicate with two Bos taurus KIT entries]	Coloration (coat)	Unknown, Complex Change	Bos grunniens domestic yak - (species) D	Domesticated	Candidate Gene	Zhang MQ; Xu X; Luo SJ (2014) The genetics of brown coat color and white spotting in domestic yaks (Bos grunniens).	GP00001343	Kit P05532	Morphology	haplotype Swf (indels and SNP)	Bos grunniens domestic yak - (species)	Bos grunniens domestic yak - (species) D	Kit (type III receptor protein-tyrosine kinase) [pseudoreplicate with two Bos taurus KIT entries]	Bos grunniens domestic yak - (species)	Published - Accepted by Curator
LACCASE 8	Xenobiotic resistance (soil contamination; serpentine)	Unknown, Unknown	Arabidopsis arenosa (species) D	Intraspecific	Association Mapping	Arnold BJ; Lahner B; DaCosta JM ; et al. (2016) Borrowed alleles and convergence in serpentine adaptation.	GP00001436	LAC8 Q9LFD2	Physiology	unknown	Arabidopsis arenosa (species)	Arabidopsis arenosa (species) D	LACCASE 8	Arabidopsis arenosa (species)	Published - Accepted by Curator
LCORL	Body size	Unknown, Unknown	Bos taurus cattle - (species)	Domesticated	Linkage Mapping	Lindholm-Perry AK; Sexten AK; Kuehn LA ; et al. (2011) Association, effects and validation of polymorphisms within the NCAPG - LCORL locus located on BTA6 [...]	GP00000535	LCORL Q8N3X6	Morphology	Not identified	Bos taurus cattle - (species)	Bos taurus cattle - (species)	LCORL	Bos taurus cattle - (species)	Published - Accepted by Curator
LCORL	Body size	Unknown, Unknown	Equus caballus horse - (species)	Domesticated	Linkage Mapping	Makvandi-Nejad S; Hoffman GE; Allen JJ ; et al. (2012) Four loci explain 83% of size variation in the horse. 3 Additional References Metzger J; Schrimpf R; Philipp U (2013) Expression levels of LCORL are associated with body size in horses. Tetens J; Widmann P; Kühn C (2013) A genome-wide association study indicates LCORL/NCAPG as a candidate locus for withers height in Ger[...] Signer-Hasler H; Flury C; Haase B (2012) A genome-wide association study reveals loci influencing height and other conformation traits in hor[...]	GP00000536	LCORL Q8N3X6	Morphology	Not identified	Equus caballus horse - (species)	Equus caballus horse - (species)	LCORL	Equus caballus horse - (species)	Published - Accepted by Curator
LCORL	Body size	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Horikoshi M; Yaghootkar H; Mook-Kanamori DO ; et al. (2013) New loci associated with birth weight identify genetic links between intrauterine growth[...]	GP00000537	LCORL Q8N3X6	Morphology	Not identified	Homo sapiens human - (species)	Homo sapiens human - (species)	LCORL	Homo sapiens human - (species)	Published - Accepted by Curator
LIN28B	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Lettre G (2011) Recent progress in the study of the genetics of height.	GP00000548	LIN28B Q6ZN17	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	LIN28B	Homo sapiens human - (species)	Published - Accepted by Curator
lncRNA:Hsr omega	Temperature tolerance	Unknown, Unknown	Drosophila melanogaster fruit fly - (species) D	Intraspecific	Linkage Mapping	McKechnie SW; Halford MM; McColl G ; et al. (1998) Both allelic variation and expression of nuclear and cytoplasmic transcripts of Hsr-omega are closel[...] 1 Additional References McColl G; McKechnie SW (1999) The Drosophila heat shock hsr-omega gene: an allele frequency cline detected by quantitative PCR.	GP00001999		Physiology		Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species) D	lncRNA:Hsr omega	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
LY86	Body fat distribution (visceral/subcutaneous ratio)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Chu AY; Deng X; Fisher VA ; et al. (2017) Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyt[...]	GP00001562	LY86 O95711	Physiology	A>T in associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	LY86	Homo sapiens human - (species)	Published - Accepted by Curator
LYPLAL1	Body fat distribution (visceral/subcutaneous ratio)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Chu AY; Deng X; Fisher VA ; et al. (2017) Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyt[...]	GP00001561	LYPLAL1 Q5VWZ2	Physiology	T>C in associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	LYPLAL1	Homo sapiens human - (species)	Published - Accepted by Curator
Mac1	Virulence	Unknown, Unknown	Cryptococcus neoformans (species)	Intraspecific	Linkage Mapping	Lin X; Huang JC; Mitchell TG ; et al. (2006) Virulence attributes and hyphal growth of C. neoformans are quantitative traits and the MATalpha all[...]	GP00000560	CGB_D8050W E6R4R6	Physiology	unknown	Cryptococcus neoformans (species)	Cryptococcus neoformans (species)	Mac1	Cryptococcus neoformans (species)	Published - Accepted by Curator
MAP4K4	Xenobiotic resistance (insecticide; Bt Cry1Ac toxin)	Unknown, Unknown	Plutella xylostella diamondback moth - (species) D	Intraspecific	Linkage Mapping	Guo Z; Kang S; Chen D ; et al. (2015) MAPK signaling pathway alters expression of midgut ALP and ABCC genes and causes resistance to Bacil[...]	GP00001673	MAP4K4 O95819	Physiology	MAP4K4 constitutively up-regulated leading to up-regulated PxABCC1 and down-regulated PxABCC2 and PxABCC3 and reduction of membrane-bound ALP (mALP) expression responsible for reduced Cry1Ac toxin binding to midgut proteins	Plutella xylostella diamondback moth - (species)	Plutella xylostella diamondback moth - (species) D	MAP4K4	Plutella xylostella diamondback moth - (species)	Published - Accepted by Curator
MARVELD3	Pathogen resistance (Plasmodium; malaria parasite)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Timmann C; Thye T; Vens M ; et al. (2012) Genome-wide association study indicates two novel resistance loci for severe malaria.	GP00000564	MARVELD3 Q96A59	Physiology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	MARVELD3	Homo sapiens human - (species)	Published - Accepted by Curator
MATE1/ZmMATE1	Metal tolerance	Unknown, Unknown	Zea mays (species)	Domesticated	Candidate Gene	Maron LG; Piñeros MA; Guimarães CT ; et al. (2010) Two functionally distinct members of the MATE (multi-drug and toxic compound extrusion) family of tr[...]	GP00000566		Physiology	unknown	Zea mays (species)	Zea mays (species)	MATE1/ZmMATE1	Zea mays (species)	Published - Accepted by Curator
Melanophilin (MLPH)	Coloration (feathers)	Unknown, Complex Change	Coturnix japonica Japanese quail - (species)	Domesticated	Linkage Mapping	Minvielle F; Cecchi T; Passamonti P ; et al. (2009) Plumage colour mutations and melanins in the feathers of the Japanese quail: a first comparison. 1 Additional References Bed'hom B; Vaez M; Coville JL (2012) The lavender plumage colour in Japanese quail is associated with a complex mutation in the region of[...]	GP00000650	Mlph Q91V27	Morphology	Large deletions and rearrangement with pseudogenization of MLPH and loss of two other genes	Coturnix japonica Japanese quail - (species)	Coturnix japonica Japanese quail - (species)	Melanophilin (MLPH)	Coturnix japonica Japanese quail - (species)	Published - Accepted by Curator
Mi1.2	Pathogen resistance (parasite)	Unknown, Unknown	Solanum lycopersicum tomato - (species)	Intraspecific	Linkage Mapping	Rossi M; Goggin FL; Milligan SB ; et al. (1998) The nematode resistance gene Mi of tomato confers resistance against the potato aphid. 2 Additional References Seah S; Yaghoobi J; Rossi M (2004) The nematode-resistance gene, Mi-1, is associated with an inverted chromosomal segment in susceptibl[...] Vos P; Simons G; Jesse T (1998) The tomato Mi-1 gene confers resistance to both root-knot nematodes and potato aphids.	GP00000655	Mi-1.2 O81137	Physiology	Not identified	Solanum peruvianum (species)	Solanum lycopersicum tomato - (species)	Mi1.2	Solanum lycopersicum tomato - (species)	Published - Accepted by Curator
Microphtalmia-associated transcription factor	Coloration (coat)	Unknown, Unknown	Bos taurus cattle - (species) D	Domesticated	Linkage Mapping	Fontanesi L; Scotti E; Russo V (2012) Haplotype variability in the bovine MITF gene and association with piebaldism in Holstein and Simmen[...] 2 Additional References Hayes BJ; Pryce J; Chamberlain AJ (2010) Genetic architecture of complex traits and accuracy of genomic prediction: coat colour, milk-fat per[...] Jivanji S; Worth G; Lopdell TJ (2019) Genome-wide association analysis reveals QTL and candidate mutations involved in white spotting in c[...]	GP00000656	Mitf Q08874	Morphology	unknown but association with intronic variant	Bos taurus cattle - (species)	Bos taurus cattle - (species) D	Microphtalmia-associated transcription factor	Bos taurus cattle - (species)	Published - Accepted by Curator
Microphtalmia-associated transcription factor	Coloration (coat)	Unknown, Unknown	Bos taurus cattle - (species) D	Domesticated	Association Mapping	Hofstetter S; Seefried F; Häfliger IM ; et al. (2019) A non-coding regulatory variant in the 5'-region of the MITF gene is associated with white-spotted c[...]	GP00002326	Mitf Q08874	Morphology	unknown based SNP association	Bos taurus cattle - (species)	Bos taurus cattle - (species) D	Microphtalmia-associated transcription factor	Bos taurus cattle - (species)	Published - Accepted by Curator
MSH4	Recombination rate (female)	Unknown, Unknown	Bos taurus cattle - (species)	Domesticated	Association Mapping	Ma L; O'Connell JR; VanRaden PM ; et al. (2015) Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis.	GP00001665	MSH4 E1BK76	Physiology	On chromosome 3. Associated SNP located in the intron of the gene	Bos taurus cattle - (species)	Bos taurus cattle - (species)	MSH4	Bos taurus cattle - (species)	Published - Accepted by Curator
Mucin gene family	Salt tolerance	Unknown, Unknown	Gasterosteus aculeatus three-spined stickleback - (species)	Intraspecific	Association Mapping	Jones FC; Chan YF; Schmutz J ; et al. (2012) A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence i[...]	GP00001378	MUC1 P15941	Physiology	unknown	Gasterosteus aculeatus three-spined stickleback - (species)	Gasterosteus aculeatus three-spined stickleback - (species)	Mucin gene family	Gasterosteus aculeatus three-spined stickleback - (species)	Published - Accepted by Curator
Na/K ATPase	Salt tolerance	Unknown, Unknown	Gasterosteus aculeatus three-spined stickleback - (species)	Intraspecific	Association Mapping	Jones FC; Chan YF; Schmutz J ; et al. (2012) A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence i[...]	GP00001377	ATP1A1 P05023	Physiology	unknown	Gasterosteus aculeatus three-spined stickleback - (species)	Gasterosteus aculeatus three-spined stickleback - (species)	Na/K ATPase	Gasterosteus aculeatus three-spined stickleback - (species)	Published - Accepted by Curator
natriuretic peptide precursor type C (NPPC)	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Estrada K; Krawczak M; Schreiber S ; et al. (2009) A genome-wide association study of northwestern Europeans involves the C-type natriuretic peptide si[...]	GP00000719	Nppc Q61839	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	natriuretic peptide precursor type C (NPPC)	Homo sapiens human - (species)	Published - Accepted by Curator
natriuretic peptide receptor 3 (NPR3)	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Estrada K; Krawczak M; Schreiber S ; et al. (2009) A genome-wide association study of northwestern Europeans involves the C-type natriuretic peptide si[...] 1 Additional References Soranzo N; Rivadeneira F; Chinappen-Horsley U (2009) Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations wi[...]	GP00000720	NPR3 Q8L746	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	natriuretic peptide receptor 3 (NPR3)	Homo sapiens human - (species)	Published - Accepted by Curator
NCED4	Seed dormancy	Unknown, Unknown	Lactuca sativa (species) D	Domesticated	Linkage Mapping	Argyris J; Truco MJ; Ochoa O ; et al. (2011) A gene encoding an abscisic acid biosynthetic enzyme (LsNCED4) collocates with the high temperature [...] 1 Additional References Huo H; Dahal P; Kunusoth K (2013) Expression of 9-cis-EPOXYCAROTENOID DIOXYGENASE4 is essential for thermoinhibition of lettuce seed g[...]	GP00000737	CCD4 O49675	Physiology	unknown	Lactuca serriola (species)	Lactuca sativa (species) D	NCED4	Lactuca sativa (species)	Published - Accepted by Curator
NEK9	Recombination rate	Unknown, Unknown	Bos taurus cattle - (species)	Domesticated	Association Mapping	Ma L; O'Connell JR; VanRaden PM ; et al. (2015) Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis.	GP00001663	NEK9 F1MM88	Physiology	On chromosome 10. Associated SNP located 10 kb dowstream	Bos taurus cattle - (species)	Bos taurus cattle - (species)	NEK9	Bos taurus cattle - (species)	Published - Accepted by Curator
NV10127-NV10128-NV10129 gene cluster	Pheromone production (isomeric/chirality divergence)	Unknown, Unknown	Nasonia giraulti (species)	Interspecific	Linkage Mapping	Niehuis O; Buellesbach J; Gibson JD ; et al. (2013) Behavioural and genetic analyses of Nasonia shed light on the evolution of sex pheromones.	GP00000744	NV10127 L8BRU0	Physiology	Not identified. Gene conversion between the three paralogues in tandem	Nasonia vitripennis jewel wasp - (species)	Nasonia giraulti (species)	NV10127-NV10128-NV10129 gene cluster	Nasonia giraulti (species)	Published - Accepted by Curator
Odysseus-site homeobox	Hybrid incompatibility (F1 male sterility)	Unknown, Unknown	Drosophila simulans (species)	Interspecific	Linkage Mapping	Bayes JJ; Malik HS (2009) Altered heterochromatin binding by a hybrid sterility protein in Drosophila sibling species.	GP00000752	OdsH Q9VX20	Physiology	Rapid coding divergence	Drosophila mauritiana (species)	Drosophila simulans (species)	Odysseus-site homeobox	Drosophila simulans (species)	Published - Accepted by Curator
OPRM1	Coloration (skin)	Unknown, Unknown	Homo sapiens human - (species) D	Intraspecific	Association Mapping	Quillen EE; Bauchet M; Bigham AW ; et al. (2012) OPRM1 and EGFR contribute to skin pigmentation differences between Indigenous Americans and European[...]	GP00001536	OPRM1 P35372	Morphology	C>T associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species) D	OPRM1	Homo sapiens human - (species)	Published - Accepted by Curator
PABPN1	Recombination rate	Unknown, Unknown	Bos taurus cattle - (species)	Domesticated	Association Mapping	Ma L; O'Connell JR; VanRaden PM ; et al. (2015) Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis.	GP00001660	PABPN1 Q28165	Physiology	On chromosome 10. Associated SNP located dowstream of PABPN1	Bos taurus cattle - (species)	Bos taurus cattle - (species)	PABPN1	Bos taurus cattle - (species)	Published - Accepted by Curator
PAP2	Coloration (anthocyanin accumulation under high-light and low-temperature stress)	Unknown, Unknown	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Ilk N; Ding J; Ihnatowicz A ; et al. (2015) Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attrib[...]	GP00001231	MYB90 Q9ZTC3	Physiology	one SNP in the coding region and several in the putative promoter region	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	PAP2	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
pastrel	Pathogen resistance (viruses)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Association Mapping	Magwire MM; Fabian DK; Schweyen H ; et al. (2012) Genome-wide association studies reveal a simple genetic basis of resistance to naturally coevolving [...]	GP00000854	pst Q8IQ82	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	pastrel	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
Patched1 (Ptc1)	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Lettre G (2011) Recent progress in the study of the genetics of height.	GP00000855	ptch1 Q98864	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	Patched1 (Ptc1)	Homo sapiens human - (species)	Published - Accepted by Curator
pax3b	Coloration (scales)	Unknown, Unknown	Tropheops sp. 'red cheek' (species)	Interspecific	Linkage Mapping	Albertson RC; Powder KE; Hu Y ; et al. (2014) Genetic basis of continuous variation in the levels and modular inheritance of pigmentation in cichl[...]	GP00001419	pax3-b Q0IH87	Morphology	unknown	Labeotropheus fuelleborni blue mbuna - (species)	Tropheops sp. 'red cheek' (species)	pax3b	Tropheops sp. 'red cheek' (species)	Published - Accepted by Curator
pdm3	Coloration (female abdomen)	Unknown, Unknown	Drosophila burlai (species)	Intraspecific	Linkage Mapping	Yassin A; Delaney EK; Reddiex AJ ; et al. (2016) The pdm3 Locus Is a Hotspot for Recurrent Evolution of Female-Limited Color Dimorphism in Drosophila[...]	GP00001402	pdm3 A0A0B4LEG2	Morphology	unknown	Drosophila burlai (species)	Drosophila burlai (species)	pdm3	Drosophila burlai (species)	Published - Accepted by Curator
Period (per)	Diapause	Unknown, Unknown	Pieris napi (species)	Intraspecific	Association Mapping	Pruisscher P; Nylin S; Wheat CW ; et al. (2021) A region of the sex chromosome associated with population differences in diapause induction contains[...] 1 Additional References Pruisscher P; Nylin S; Wheat CW (2021) A region of the sex chromosome associated with population differences in diapause induction contains[...]	GP00002427	per P07663	Physiology	Multiple amino acid differences. Presence of five fixed SNPs between the N and S populations (one intergenic, two intronic and two exonic nonsynonymous substitutions).	Pieris napi (species)	Pieris napi (species)	Period (per)	Pieris napi (species)	Published - Accepted by Curator
PGRP-LC	Pathogen resistance	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Candidate Gene	Sackton TB; Lazzaro BP; Clark AG (2010) Genotype and gene expression associations with immune function in Drosophila.	GP00000861	PGRP-LC Q9GNK5	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	PGRP-LC	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
PHGPx	Xenobiotic resistance (gemcitabine ; female fertility)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Association Mapping	King EG; Kislukhin G; Walters KN ; et al. (2014) Using Drosophila melanogaster to identify chemotherapy toxicity genes.	GP00001405	PHGPx Q8IRD4	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	PHGPx	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
phytoene synthase	Carotenoid content (seed)	Unknown, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Palaisa KA; Morgante M; Williams M ; et al. (2003) Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene sy[...] 1 Additional References Buckner B; Miguel PS; Janick-Buckner D (1996) The y1 gene of maize codes for phytoene synthase.	GP00000875	PSY1 P49085	Physiology	Not identified	Zea mays (species)	Zea mays (species)	phytoene synthase	Zea mays (species)	Published - Accepted by Curator
Pib	Pathogen resistance	Unknown, Unknown	Oryza sativa rice - (species)	Domesticated	Linkage Mapping	Wang ZX; Yano M; Yamanouchi U ; et al. (1999) The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat cla[...]	GP00000882	Pi-b Q9SSY0	Physiology	unknown	Oryza sativa rice - (species)	Oryza sativa rice - (species)	Pib	Oryza sativa rice - (species)	Published - Accepted by Curator
PigmR	Pathogen resistance (plant fungus pathogen)	Unknown, Unknown	Oryza sativa rice - (species)	Intraspecific	Linkage Mapping	Deng Y; Zhai K; Xie Z ; et al. (2017) Epigenetic regulation of antagonistic receptors confers rice blast resistance with yield balance.	GP00001592	Pigm_GM4.7 A0A1P8CYR1	Physiology	unknown	Oryza sativa rice - (species)	Oryza sativa rice - (species)	PigmR	Oryza sativa rice - (species)	Published - Accepted by Curator
PIK3CG	Hematopoiesis (mean blood platelet volume)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Guo MH; Nandakumar SK; Ulirsch JC ; et al. (2017) Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mech[...]	GP00001611	PIK3CG P48736	Physiology	C>G at the associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	PIK3CG	Homo sapiens human - (species)	Published - Accepted by Curator
PPAR-alpha	Hypoxia response	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Simonson TS; Yang Y; Huff CD ; et al. (2010) Genetic evidence for high-altitude adaptation in Tibet. 1 Additional References Bigham A; Bauchet M; Pinto D (2010) Identifying signatures of natural selection in Tibetan and Andean populations using dense genome sca[...]	GP00000917	PPARA Q07869	Physiology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	PPAR-alpha	Homo sapiens human - (species)	Published - Accepted by Curator
PPAR-delta	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	N'Diaye A; Chen GK; Palmer CD ; et al. (2011) Identification, replication, and fine-mapping of Loci associated with adult height in individuals of[...] 1 Additional References Lango Allen H; Estrada K; Lettre G (2010) Hundreds of variants clustered in genomic loci and biological pathways affect human height.	GP00000918	PPARD Q03181	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	PPAR-delta	Homo sapiens human - (species)	Published - Accepted by Curator
Prdm9	Hybrid incompatibility (F1 male sterility) Recombination rate (use of recombination hotspots)	Unknown, Unknown	Mus musculus house mouse - (species)	Intraspecific	Linkage Mapping	Mihola O; Trachtulec Z; Vlcek C ; et al. (2009) A mouse speciation gene encodes a meiotic histone H3 methyltransferase. 2 Additional References Baudat F; Buard J; Grey C (2010) PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice. Flachs P; Mihola O; Simeček P (2012) Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility.	GP00000922	Prdm9 Q96EQ9	Physiology Physiology	possible dosage difference (number of gene copies) interacting with an allele that affects post-transcriptional stability	Mus musculus house mouse - (species)	Mus musculus house mouse - (species)	Prdm9	Mus musculus house mouse - (species)	Published - Accepted by Curator
Prdm9	Recombination rate (use of recombination hotspots)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Candidate Gene	Berg IL; Neumann R; Sarbajna S ; et al. (2011) Variants of the protein PRDM9 differentially regulate a set of human meiotic recombination hotspots [...]	GP00000923	Prdm9 Q96EQ9	Physiology	Various haplotypes	Homo sapiens human - (species)	Homo sapiens human - (species)	Prdm9	Homo sapiens human - (species)	Published - Accepted by Curator
PRKCD	Pathogen resistance	Unknown, Unknown	Gasterosteus aculeatus three-spined stickleback - (species)	Intraspecific	Association Mapping	Jones FC; Chan YF; Schmutz J ; et al. (2012) A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence i[...]	GP00001381	PRKCD Q05655	Physiology	unknown	Gasterosteus aculeatus three-spined stickleback - (species)	Gasterosteus aculeatus three-spined stickleback - (species)	PRKCD	Gasterosteus aculeatus three-spined stickleback - (species)	Published - Accepted by Curator
PROG1	Plant architecture	Unknown, Unknown	Oryza sativa rice - (species)	Domesticated	Candidate Gene	Tan L; Li X; Liu F ; et al. (2008) Control of a key transition from prostrate to erect growth in rice domestication. 2 Additional References Huang X; Kurata N; Wei X (2012) A map of rice genome variation reveals the origin of cultivated rice. Jin J; Huang W; Gao JP (2008) Genetic control of rice plant architecture under domestication.	GP00000925	PROG1 Q69NY0	Morphology	Various	Oryza rufipogon (species)	Oryza sativa rice - (species)	PROG1	Oryza sativa rice - (species)	Published - Accepted by Curator
prophenoloxidase 1 (PPO1)	Enzymatic activity	Unknown, Unknown	Drosophila melanogaster fruit fly - (species) D	Intraspecific	Candidate Gene	Asada N (1997) Genetic variants affecting phenoloxidase activity in Drosophila melanogaster.	GP00002001		Physiology	Exact causing mutation(s) unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species) D	prophenoloxidase 1 (PPO1)	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
PRR37-like Photoperiod-H1 (Ppd-H1)	Flowering time	Unknown, Unknown	Hordeum vulgare (species)	Domesticated	Linkage Mapping	Turner A; Beales J; Faure S ; et al. (2005) The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. 1 Additional References Campoli C; Shtaya M; Davis SJ (2012) Expression conservation within the circadian clock of a monocot: natural variation at barley Ppd-H1 [...]	GP00000933	PRR37 Q0D3B6	Physiology	unknown	Hordeum vulgare (species)	Hordeum vulgare (species)	PRR37-like Photoperiod-H1 (Ppd-H1)	Hordeum vulgare (species)	Published - Accepted by Curator
PSMD13	Hematopoiesis (mean blood platelet volume)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Guo MH; Nandakumar SK; Ulirsch JC ; et al. (2017) Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mech[...]	GP00001615	PSMD13 Q9UNM6	Physiology	A>G at the associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	PSMD13	Homo sapiens human - (species)	Published - Accepted by Curator
Pto	Pathogen resistance	Unknown, Unknown	Solanum lycopersicum tomato - (species)	Domesticated	Linkage Mapping	Martin GB; Brommonschenkel SH; Chunwongse J ; et al. (1993) Map-based cloning of a protein kinase gene conferring disease resistance in tomato.	GP00000937	pto P93215	Physiology	Not identified	Solanum lycopersicum tomato - (species)	Solanum lycopersicum tomato - (species)	Pto	Solanum lycopersicum tomato - (species)	Published - Accepted by Curator
PVX_084940	Xenobiotic resistance (multiresistance to antimalarial drugs)	Unknown, Unknown	Plasmodium vivax malaria parasite P. vivax - (species)	Intraspecific	Association Mapping	Pearson RD; Amato R; Auburn S ; et al. (2016) Genomic analysis of local variation and recent evolution in Plasmodium vivax.	GP00001487	PVX_084940 A5K0T0	Physiology	unknown	Plasmodium vivax malaria parasite P. vivax - (species)	Plasmodium vivax malaria parasite P. vivax - (species)	PVX_084940	Plasmodium vivax malaria parasite P. vivax - (species)	Published - Accepted by Curator
r1 colored1	Coloration (seeds)	Unknown, Insertion	Zea mays (species) D	Domesticated	Linkage Mapping	Hanson MA; Gaut BS; Stec AO ; et al. (1996) Evolution of anthocyanin biosynthesis in maize kernels: the role of regulatory and enzymatic loci. 1 Additional References Kong Q; Pattanaik S; Feller A (2012) Regulatory switch enforced by basic helix-loop-helix and ACT-domain mediated dimerizations of the ma[...]	GP00000947	Z138B04_Z333J11.11 Q8S483	Morphology	insertion of transposable element Ac	Zea mays (species)	Zea mays (species) D	r1 colored1	Zea mays (species)	Published - Accepted by Curator
R2R3 MYB transcription factor	Trichome density (leaf)	Unknown, Unknown	Erythranthe guttata spotted monkey flower - (species)	Domesticated	Linkage Mapping	Hendrick MF; Finseth FR; Mathiasson ME ; et al. (2016) The genetics of extreme microgeographic adaptation: an integrated approach identifies a major gene u[...]	GP00001598	PELAN A0A060IEP7	Morphology	Unknown ; candidate indel in first intron and a nonsynonymous substitution (glutamine>lysine) in the 3rd exon	Erythranthe guttata spotted monkey flower - (species)	Erythranthe guttata spotted monkey flower - (species)	R2R3 MYB transcription factor	Erythranthe guttata spotted monkey flower - (species)	Published - Accepted by Curator
RB1	Body size (weight) Body size (bone length)	Unknown, Unknown	Gallus gallus chicken - (species)	Domesticated	Linkage Mapping	Zhang H; Liu SH; Zhang Q ; et al. (2011) Fine-mapping of quantitative trait loci for body weight and bone traits and positional cloning of th[...]	GP00000957		Morphology Morphology	unknown	Gallus gallus chicken - (species)	Gallus gallus chicken - (species)	RB1	Gallus gallus chicken - (species)	Published - Accepted by Curator
REC114	Recombination rate	Unknown, Unknown	Bos taurus cattle - (species)	Domesticated	Association Mapping	Ma L; O'Connell JR; VanRaden PM ; et al. (2015) Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis.	GP00001661	REC114 Q7Z4M0	Physiology	On chromosome 10. Associated SNP located dowstream of the gene	Bos taurus cattle - (species)	Bos taurus cattle - (species)	REC114	Bos taurus cattle - (species)	Published - Accepted by Curator
Regulator of G-protein signaling 2 (RGS2)	Anxiety	Unknown, Unknown	Mus musculus house mouse - (species)	Intraspecific	Linkage Mapping	Yalcin B; Willis-Owen SA; Fullerton J ; et al. (2004) Genetic dissection of a behavioral quantitative trait locus shows that Rgs2 modulates anxiety in mic[...]	GP00000967	Rgs2 O08849	Behavior	unknown	Mus musculus house mouse - (species)	Mus musculus house mouse - (species)	Regulator of G-protein signaling 2 (RGS2)	Mus musculus house mouse - (species)	Published - Accepted by Curator
RnrS	Xenobiotic resistance (gemcitabine ; female fertility)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Association Mapping	King EG; Kislukhin G; Walters KN ; et al. (2014) Using Drosophila melanogaster to identify chemotherapy toxicity genes.	GP00001404	RnrS P48592	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	RnrS	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
ROSEA	Coloration (flowers)	Unknown, Unknown	Antirrhinum majus snapdragon - (species)	Intraspecific	Linkage Mapping	Whibley AC; Langlade NB; Andalo C ; et al. (2006) Evolutionary paths underlying flower color variation in Antirrhinum.	GP00000997	ROS1 Q2VAZ7	Morphology	Not identified	Antirrhinum majus snapdragon - (species)	Antirrhinum majus snapdragon - (species)	ROSEA	Antirrhinum majus snapdragon - (species)	Published - Accepted by Curator
Rp3 cluster	Pathogen resistance	Unknown, Unknown	Zea mays (species)	Domesticated	Linkage Mapping	Webb CA; Richter TE; Collins NC ; et al. (2002) Genetic and molecular characterization of the maize rp3 rust resistance locus.	GP00000999	rp3-1 Q6PW75	Physiology	unknown	Zea mays (species)	Zea mays (species)	Rp3 cluster	Zea mays (species)	Published - Accepted by Curator
RPP1	Hybrid incompatibility	Unknown, Complex Change	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Alcázar R; von Reth M; Bautor J ; et al. (2014) Analysis of a plant complex resistance gene locus underlying immune-related hybrid incompatibility a[...] 1 Additional References Alcázar R; García AV; Kronholm I (2010) Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between [...]	GP00001281	RPP1 F4J339	Physiology	complex	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	RPP1	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
RPP1	Hybrid incompatibility	Unknown, Complex Change	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Alcázar R; von Reth M; Bautor J ; et al. (2014) Analysis of a plant complex resistance gene locus underlying immune-related hybrid incompatibility a[...] 1 Additional References Alcázar R; García AV; Kronholm I (2010) Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between [...]	GP00001282	RPP1 F4J339	Physiology	complex	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	RPP1	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
RREB1	Body fat distribution (visceral)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Chu AY; Deng X; Fisher VA ; et al. (2017) Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyt[...]	GP00001555	RREB1 Q92766	Physiology	C>G in associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	RREB1	Homo sapiens human - (species)	Published - Accepted by Curator
SaM + SaF	Hybrid incompatibility (F1 male sterility)	Unknown, Unknown	Oryza sativa rice - (species)	Domesticated	Linkage Mapping	Long Y; Zhao L; Niu B ; et al. (2008) Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent ge[...] 1 Additional References Craig SM; Reagon M; Resnick LE (2014) Allele distributions at hybrid incompatibility loci facilitate the potential for gene flow between c[...]	GP00001022	SaF+ B6RRX2	Physiology	Intron structure + aa changes on two adjacent coding genes	Oryza sativa rice - (species)	Oryza sativa rice - (species)	SaM + SaF	Oryza sativa rice - (species)	Published - Accepted by Curator
scabrous	Bristle number (abdomen)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Linkage Mapping	Lai C; Lyman RF; Long AD ; et al. (1994) Naturally occurring variation in bristle number and DNA polymorphisms at the scabrous locus of Droso[...]	GP00001024	sca P21520	Morphology	unknown; but different sites than for thorax association	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	scabrous	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
scabrous	Bristle number (thorax)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Linkage Mapping	Lai C; Lyman RF; Long AD ; et al. (1994) Naturally occurring variation in bristle number and DNA polymorphisms at the scabrous locus of Droso[...]	GP00001025	sca P21520	Morphology	unknown; but different sites than for abdomen association	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	scabrous	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
sdY	Sex determination	Unknown, Unknown	Teleostei teleost fishes - (infraclass)	Interspecific	Linkage Mapping	Yano A; Guyomard R; Nicol B ; et al. (2012) An immune-related gene evolved into the master sex-determining gene in rainbow trout, Oncorhynchus m[...]	GP00001033	sdy I7GVT3	Physiology	Novel gene evolution by modification of the irf9 gene; unrelated to sex determination	Oncorhynchus mykiss rainbow trout - (species)	Teleostei teleost fishes - (infraclass)	sdY	Teleostei teleost fishes - (infraclass)	Published - Accepted by Curator
Shattering1 - OsSh1	Seed shattering	Unknown, Insertion	Oryza sativa rice - (species) D	Domesticated	Association Mapping	Lin Z; Li X; Shannon LM ; et al. (2012) Parallel domestication of the Shattering1 genes in cereals. 2 Additional References He Z; Zhai W; Wen H (2011) Two evolutionary histories in the genome of rice: the roles of domestication genes. Xu X; Liu X; Ge S (2011) Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically [...]	GP00001039	YAB2 Q10FZ7	Physiology	>4kb insertion in intron (unclear)	Oryza sativa rice - (species)	Oryza sativa rice - (species) D	Shattering1 - OsSh1	Oryza sativa rice - (species)	Published - Accepted by Curator
sid-2	Immune response (RNAi efficiency)	Unknown, Unknown	Caenorhabditis elegans (species)	Interspecific	Candidate Gene	Winston WM; Sutherlin M; Wright AJ ; et al. (2007) Caenorhabditis elegans SID-2 is required for environmental RNA interference.	GP00001051	sid-2 G5EEV9	Physiology	unknown	Caenorhabditis (genus)	Caenorhabditis elegans (species)	sid-2	Caenorhabditis elegans (species)	Published - Accepted by Curator
SMC3	Recombination rate (female)	Unknown, Unknown	Bos taurus cattle - (species)	Domesticated	Association Mapping	Ma L; O'Connell JR; VanRaden PM ; et al. (2015) Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis.	GP00001666	SMC3 O97594	Physiology	On chromosome 26. Associated SNP located upstream	Bos taurus cattle - (species)	Bos taurus cattle - (species)	SMC3	Bos taurus cattle - (species)	Published - Accepted by Curator
smooth	Bristle number (abdomen)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species) D	Intraspecific	Linkage Mapping	zur Lage P; Shrimpton AD; Flavell AJ ; et al. (1997) Genetic and molecular analysis of smooth, a quantitative trait locus affecting bristle number in Dro[...]	GP00001996		Morphology	exact causing mutation(s) unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species) D	smooth	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
SOD3	Oxidative stress resistance Blood pressure	Unknown, Unknown	Gasterosteus aculeatus three-spined stickleback - (species)	Intraspecific	Association Mapping	Jones FC; Chan YF; Schmutz J ; et al. (2012) A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence i[...]	GP00001380	SOD3 P08294	Physiology Physiology	unknown	Gasterosteus aculeatus three-spined stickleback - (species)	Gasterosteus aculeatus three-spined stickleback - (species)	SOD3	Gasterosteus aculeatus three-spined stickleback - (species)	Published - Accepted by Curator
SR-CII	Pathogen resistance	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Candidate Gene	Lazzaro BP; Sackton TB; Clark AG (2006) Genetic variation in Drosophila melanogaster resistance to infection: a comparison across bacteria.	GP00001071	Sr-CII Q5ELW9	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	SR-CII	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
SRF3	Hybrid Incompatibility	Unknown, Complex Change	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Alcázar R; García AV; Kronholm I ; et al. (2010) Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between [...] 1 Additional References Alcázar R; von Reth M; Bautor J (2014) Analysis of a plant complex resistance gene locus underlying immune-related hybrid incompatibility a[...]	GP00001072	SRF3 Q6R2K3	Physiology	Complex haplotype	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	SRF3	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
SRF3	Hybrid Incompatibility	Unknown, Complex Change	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Alcázar R; García AV; Kronholm I ; et al. (2010) Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between [...] 1 Additional References Alcázar R; von Reth M; Bautor J (2014) Analysis of a plant complex resistance gene locus underlying immune-related hybrid incompatibility a[...]	GP00001073	SRF3 Q6R2K3	Physiology	Complex haplotype	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	SRF3	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
sulfate transporter 1;1	Xenobiotic resistance (soil contamination; serpentine)	Unknown, Unknown	Arabidopsis arenosa (species) D	Intraspecific	Association Mapping	Arnold BJ; Lahner B; DaCosta JM ; et al. (2016) Borrowed alleles and convergence in serpentine adaptation.	GP00001429	SULTR1;1 Q9SAY1	Physiology	unknown	Arabidopsis arenosa (species)	Arabidopsis arenosa (species) D	sulfate transporter 1;1	Arabidopsis arenosa (species)	Published - Accepted by Curator
Tehao	Pathogen resistance	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Candidate Gene	Lazzaro BP; Sackton TB; Clark AG (2006) Genetic variation in Drosophila melanogaster resistance to infection: a comparison across bacteria.	GP00001115	Tehao Q9VJX9	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	Tehao	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
TLR6-TLR1-TLR10 cluster	Immune response	Unknown, Complex Change	Homo sapiens human - (species)	Intraspecific	Association Mapping	Laayouni H; Oosting M; Luisi P ; et al. (2014) Convergent evolution in European and Rroma populations reveals pressure exerted by plague on Toll-li[...] 1 Additional References Dannemann M; Andrés AM; Kelso J (2016) Introgression of Neandertal- and Denisovan-like Haplotypes Contributes to Adaptive Variation in Huma[...]	GP00001130	TLR1 Q15399	Physiology	Several Complex Haplotypes under positive selection - evidence on Adaptive Introgression from Neanderthal (2 haplotypes) and Denisova (1 haplotype)	Homo sapiens human - (species)	Homo sapiens human - (species)	TLR6-TLR1-TLR10 cluster	Homo sapiens human - (species)	Published - Accepted by Curator
touch insensitive larva B (tilB)	Pupation site choice	Unknown, Unknown	Drosophila simulans (species)	Interspecific	Linkage Mapping	Pischedda A; Shahandeh MP; Turner TL (2020) The Loci of Behavioral Evolution: Evidence That Fas2 and tilB Underlie Differences in Pupation Site [...]	GP00002344	tilB Q9VR52	Behavior	Gene identified via deficiency mapping. Gene more highly expressed in D. melanogaster than in D. simulans. RNAi in D. melanogaster leads to pupae pupating closer to the food.	Drosophila melanogaster fruit fly - (species)	Drosophila simulans (species)	touch insensitive larva B (tilB)	Drosophila simulans (species)	Published - Accepted by Curator
TRIB2	Body fat distribution (pericardial)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Chu AY; Deng X; Fisher VA ; et al. (2017) Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyt[...]	GP00001559	TRIB2 Q92519	Physiology	A>G in associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	TRIB2	Homo sapiens human - (species)	Published - Accepted by Curator
Trichohyalin	Hair type (straight)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Medland SE; Nyholt DR; Painter JN ; et al. (2009) Common variants in the trichohyalin gene are associated with straight hair in Europeans.	GP00001134	TCHH Q07283	Morphology	Not identified	Homo sapiens human - (species)	Homo sapiens human - (species)	Trichohyalin	Homo sapiens human - (species)	Published - Accepted by Curator
TRIP11 (=GMAP-210)	Body size (height)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Lettre G (2011) Recent progress in the study of the genetics of height.	GP00001138	TRIP11 Q15643	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	TRIP11 (=GMAP-210)	Homo sapiens human - (species)	Published - Accepted by Curator
two pore channel	Xenobiotic resistance (soil contamination; serpentine)	Unknown, Unknown	Arabidopsis arenosa (species) D	Intraspecific	Association Mapping	Arnold BJ; Lahner B; DaCosta JM ; et al. (2016) Borrowed alleles and convergence in serpentine adaptation.	GP00001433	TPC1 Q94KI8	Physiology	unknown	Arabidopsis arenosa (species)	Arabidopsis arenosa (species) D	two pore channel	Arabidopsis arenosa (species)	Published - Accepted by Curator
Tyramine receptor 3	Exploration decision	Unknown, Unknown	Caenorhabditis elegans (species)	Intraspecific	Linkage Mapping	Bendesky A; Tsunozaki M; Rockman MV ; et al. (2011) Catecholamine receptor polymorphisms affect decision-making in C. elegans.	GP00001141	tyra-3 Q7JNP9	Behavior	Non-coding	Caenorhabditis elegans (species)	Caenorhabditis elegans (species)	Tyramine receptor 3	Caenorhabditis elegans (species)	Published - Accepted by Curator
tyrosinase-related protein 1 (TYRP1)	Coloration (eyes; hair; skin)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Frudakis T; Thomas M; Gaskin Z ; et al. (2003) Sequences associated with human iris pigmentation. 1 Additional References Sulem P; Gudbjartsson DF; Stacey SN (2008) Two newly identified genetic determinants of pigmentation in Europeans.	GP00001157	Tyrp1 P07147	Morphology	unknown	Homo sapiens human - (species)	Homo sapiens human - (species)	tyrosinase-related protein 1 (TYRP1)	Homo sapiens human - (species)	Published - Accepted by Curator
UBE2E2	Body fat distribution (visceral/subcutaneous ratio)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Chu AY; Deng X; Fisher VA ; et al. (2017) Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyt[...]	GP00001553	UBE2E2 Q96LR5	Physiology	T>C in associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	UBE2E2	Homo sapiens human - (species)	Published - Accepted by Curator
Ubiquitin conjugating enzyme E2H (Ubc-E2H)	Pathogen resistance (Drosophila C virus & cricket paralysis virus)	Unknown, Unknown	Drosophila melanogaster fruit fly - (species) D	Experimental Evolution	Association Mapping	Martins NE; Faria VG; Nolte V ; et al. (2014) Host adaptation to viruses relies on few genes with different cross-resistance properties.	GP00001480	UbcE2H Q7JW03	Physiology	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species) D	Ubiquitin conjugating enzyme E2H (Ubc-E2H)	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
UDP-glycosyltransferase 89A2	Plant secondary metabolites (xylosides vs. glucosides ratio)	Unknown, Unknown	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Li X; Svedin E; Mo H ; et al. (2014) Exploiting natural variation of secondary metabolism identifies a gene controlling the glycosylation[...]	GP00001278	UGT89A2 Q9LZD8	Physiology	unknown	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	UDP-glycosyltransferase 89A2	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
Vanaso / disc losts	Olfactory behavior	Unknown, Unknown	Drosophila melanogaster fruit fly - (species)	Intraspecific	Linkage Mapping	Fanara JJ; Robinson KO; Rollmann SM ; et al. (2002) Vanaso is a candidate quantitative trait gene for Drosophila olfactory behavior.	GP00001164	dlt Q8T626	Behavior	unknown	Drosophila melanogaster fruit fly - (species)	Drosophila melanogaster fruit fly - (species)	Vanaso / disc losts	Drosophila melanogaster fruit fly - (species)	Published - Accepted by Curator
Vertnin (VRTN) [possibly a pseudo-replicate of other Pig entry]	Vertebrae number	Unknown, Unknown	Sus scrofa domesticus domestic pig - (subspecies)	Domesticated	Linkage Mapping	Ren DR; Ren J; Ruan GF ; et al. (2012) Mapping and fine mapping of quantitative trait loci for the number of vertebrae in a White Duroc × C[...]	GP00001166	Vrtn Q3SYK4	Morphology	unknown	Sus scrofa pig - (species)	Sus scrofa domesticus domestic pig - (subspecies)	Vertnin (VRTN) [possibly a pseudo-replicate of other Pig entry]	Sus scrofa domesticus domestic pig - (subspecies)	Published - Accepted by Curator
VGLL3 (vestigial-like family member 3 gene )	Age of sexual maturity	Unknown, Unknown	Salmo salar Atlantic salmon - (species)	Intraspecific	Association Mapping	Barson NJ; Aykanat T; Hindar K ; et al. (2015) Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon. 1 Additional References Ayllon F; Kjærner-Semb E; Furmanek T (2015) The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) M[...]	GP00001167	VGLL3 A8MV65	Physiology	candidate amino-acid substitutions	Salmo salar Atlantic salmon - (species)	Salmo salar Atlantic salmon - (species)	VGLL3 (vestigial-like family member 3 gene )	Salmo salar Atlantic salmon - (species)	Published - Accepted by Curator
VIN3	Flowering time	Unknown, Unknown	Arabidopsis thaliana thale cress - (species)	Intraspecific	Linkage Mapping	Ågren J; Oakley CG; Lundemo S ; et al. (2017) Adaptive divergence in flowering time among natural populations of Arabidopsis thaliana: Estimates o[...]	GP00001538	VIN3 Q9FIE3	Physiology	4 nonsynonymous substitutions and a 3 bp deletion	Arabidopsis thaliana thale cress - (species)	Arabidopsis thaliana thale cress - (species)	VIN3	Arabidopsis thaliana thale cress - (species)	Published - Accepted by Curator
VvMYBA1	Coloration (fruit)	Unknown, Unknown	Vitis vinifera wine grape - (species)	Domesticated	Linkage Mapping	Fournier-Level A; Le Cunff L; Gomez C ; et al. (2009) Quantitative genetic bases of anthocyanin variation in grape (Vitis vinifera L. ssp. sativa) berry: [...]	GP00001193	VvmybA1 Q6L973	Morphology	Gret1 insertion polymorphism + R188S + Q213P	Vitis vinifera wine grape - (species)	Vitis vinifera wine grape - (species)	VvMYBA1	Vitis vinifera wine grape - (species)	Published - Accepted by Curator
WDR66	Hematopoiesis (mean blood platelet volume)	Unknown, Unknown	Homo sapiens human - (species)	Intraspecific	Association Mapping	Guo MH; Nandakumar SK; Ulirsch JC ; et al. (2017) Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mech[...]	GP00001604	WDR66 Q8TBY9	Physiology	A>G at the associated SNP	Homo sapiens human - (species)	Homo sapiens human - (species)	WDR66	Homo sapiens human - (species)	Published - Accepted by Curator
Xa1	Pathogen resistance	Unknown, Unknown	Oryza sativa rice - (species)	Intraspecific	Linkage Mapping	Yoshimura S; Yamanouchi U; Katayose Y ; et al. (1998) Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation.	GP00001216	XA1 A0A0H5AGW3	Physiology	unknown	Oryza sativa rice - (species)	Oryza sativa rice - (species)	Xa1	Oryza sativa rice - (species)	Published - Accepted by Curator
Xmrk	Hybrid incompatibility (melanoma)	Unknown, Unknown	Xiphophorus hellerii green swordtail - (species)	Interspecific	Linkage Mapping	Adam D; Dimitrijevic N; Schartl M (1993) Tumor suppression in Xiphophorus by an accidentally acquired promoter. 1 Additional References Schartl M (2008) Evolution of Xmrk: an oncogene, but also a speciation gene?	GP00001219	xmrk P13388	Physiology	Various	Xiphophorus maculatus southern platyfish - (species)	Xiphophorus hellerii green swordtail - (species)	Xmrk	Xiphophorus hellerii green swordtail - (species)	Published - Accepted by Curator
yellow	Coloration (male-specific)	Unknown, Unknown	Drosophila merina (species)	Interspecific	Linkage Mapping	Signor SA; Liu Y; Rebeiz M ; et al. (2016) Genetic Convergence in the Evolution of Male-Specific Color Patterns in Drosophila.	GP00001550	y P09957	Morphology	unknown	Drosophila ercepeae (species)	Drosophila merina (species)	yellow	Drosophila merina (species)	Published - Accepted by Curator
yellow	Coloration (male-specific)	Unknown, Unknown	Drosophila bipectinata (species)	Interspecific	Linkage Mapping	Signor SA; Liu Y; Rebeiz M ; et al. (2016) Genetic Convergence in the Evolution of Male-Specific Color Patterns in Drosophila.	GP00001551	y P09957	Morphology	unknown	Drosophila malerkotliana (species)	Drosophila bipectinata (species)	yellow	Drosophila bipectinata (species)	Published - Accepted by Curator
Zygotic hybrid rescue	F1 lethality (female-limited)	Unknown, Unknown	Drosophila simulans (species)	Interspecific	Linkage Mapping	Ferree PM; Barbash DA (2009) Species-specific heterochromatin prevents mitotic chromosome segregation to cause hybrid lethality i[...]	GP00001228		Physiology	Heterochromatin incompatibilitity	Drosophila melanogaster fruit fly - (species)	Drosophila simulans (species)	Zygotic hybrid rescue	Drosophila simulans (species)	Published - Accepted by Curator